Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B24
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 31 0.84
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 30 1.1
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 2.6
01_06_1261 - 35826513-35828941,35829201-35829294 29 2.6
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 29 2.6
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 29 3.4
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 29 3.4
09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938 28 4.5
07_03_1501 - 27005542-27005976,27006657-27008660 28 5.9
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 28 5.9
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 30.7 bits (66), Expect = 0.84
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 349 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSS-SITSDCIQ 495
EL K+ ++E EN+ LK ++ ++ SLQ V LE + S+ +DC+Q
Sbjct: 1090 ELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQTLSLANDCLQ 1139
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 349 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSEKPAAA 522
ELS KV LE E DL++A+ D + ++ + +E +T D ++ +E+ AAA
Sbjct: 616 ELSAKVEQLEQELSDLRQALLDKQEQEQAMLQVLMRVEQEQKVTEDA-RIFAEQDAAA 672
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 343 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSE 507
N+E K+ SL+ EN+DL + RN ++ ++ ++T ++ T+ + +Q E
Sbjct: 1277 NSEYQQKIYSLQEENEDLTR-----RNQLMEKELDLKTSQNKDENTNKQVSLQDE 1326
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 274 KARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 453
K +Q ++S E S LAG + E+ KVISLE I+ ++N LQ R++
Sbjct: 311 KVKQKFESSSEA--SAVHLAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLD 367
Query: 454 TLESSSS 474
+LE +
Sbjct: 368 SLEDEKA 374
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 268 VAKARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 447
+A AR ++ E A L TEL + L+ +N++ + AI D+ L+I + R
Sbjct: 305 IATARDSLRQREEAKKKQAEL-----TELENEATELKQKNEEERVAIQDMEALLIKRRRR 359
Query: 448 VE 453
VE
Sbjct: 360 VE 361
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 370 SLENENKDLKKAIDDLRNLVISLQVRVETLESSSSI 477
SLE++ K+LK D+LR+ L+V ETLE I
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKI 181
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 283 QHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRN 423
+ ++ ++ M++ A + + ++ L NEN+ LK IDDL++
Sbjct: 421 EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKS 467
>09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938
Length = 268
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +1
Query: 289 IKNSLECMDSVATLAGVPNTELSTKV-ISLENENKDLKKAIDDL----RNLVISLQVRVE 453
I+ LE MD G ++ KV +SLE+ + L++ I + R + +L +
Sbjct: 25 IQEKLEVMDKKLEKQGERLDQVQAKVDLSLESLGQVLQEQIHVMQAVKRTVPATLVIPTR 84
Query: 454 TLESSSSITSDCIQVQSEKP 513
T+E++SS+T + QV P
Sbjct: 85 TMEATSSVTREQPQVTIPMP 104
>07_03_1501 - 27005542-27005976,27006657-27008660
Length = 812
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 331 AGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQV 444
AGVP+T+++ +++ + E++ + + +R VI L +
Sbjct: 707 AGVPDTDIAGRLVEILKEHRTPRVKVPRMRRFVIELAI 744
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 349 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETL-ESSSSITSDCIQVQSEKPAAAS 525
EL ++LEN +LKK ++ L S ++ ++ L + +S+T ++Q+E + S
Sbjct: 597 ELKQTKVNLENAVSELKKEVESLTEQNRSSELLIQELRDEINSLTDSRNELQNEIQSLRS 656
Query: 526 T 528
T
Sbjct: 657 T 657
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,075
Number of Sequences: 37544
Number of extensions: 211182
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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