Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B22
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (D...    31   4.5  
AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subu...    31   4.5  

>BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (DNA
           directed) polypeptide B protein.
          Length = 1133

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +2

Query: 194 ETKGLIVSQHVQ*ENK----DIKKI*ELNSLVRYDPFPVRYLGHVNIYLCMINLSTTF 355
           + KGL V QH+   N     +IKKI + N  V  D  P+ YL ++NIY+ + ++  +F
Sbjct: 35  KVKGL-VKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESF 91


>AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subunit
           RPC2 protein.
          Length = 1133

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +2

Query: 194 ETKGLIVSQHVQ*ENK----DIKKI*ELNSLVRYDPFPVRYLGHVNIYLCMINLSTTF 355
           + KGL V QH+   N     +IKKI + N  V  D  P+ YL ++NIY+ + ++  +F
Sbjct: 35  KVKGL-VKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESF 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,469,055
Number of Sequences: 237096
Number of extensions: 1791958
Number of successful extensions: 6145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6143
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)