Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B20
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    69   7e-13
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    36   0.006
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   4.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   8.3  

>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 21/170 (12%)
 Frame = +2

Query: 179 IASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHE-EINSIYKLN--KSHISLLEEF- 346
           I S +   ++I   + VV+++D +PK+K+H L++  +  +  ++ L     H SL+E+  
Sbjct: 42  IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLV 101

Query: 347 --------GNIFKELKE------ENES---ELRAGFHAIPSMQRMHMHVISTDMISTSLK 475
                   G IF E +        NE+    ++ GFHA PSM  +H+H+++ D +S SLK
Sbjct: 102 SYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLK 161

Query: 476 TKIHWNSFCTKFFIPYDELLQELKDIGNIRKIPSELHTSLMKTPLQCNQC 625
              H+ SF + FF+  D     L   G +        TSL +  L+C +C
Sbjct: 162 NSAHYISFTSPFFVKIDTPTSNLPTRGTL--------TSLFQEDLKCWRC 203


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
 Frame = +2

Query: 242 DKYPKAKVHYLVLPHE-EINSIYKLNKSHISLLEEFGN-IFKELKEE---NESELRAGFH 406
           D+   + ++ + + H  +I SI  L   HI LLE   N +  E+ ++   ++++L+   H
Sbjct: 176 DRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVH 235

Query: 407 AIPSMQRMHMHVISTD 454
            +PS   +H+H++  D
Sbjct: 236 YLPSYYHLHVHILHVD 251


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 266 HYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 391
           ++++ PH + +   K+ + H +L  +F  +F+ L  ENE  +
Sbjct: 408 YFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESV 449


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 287  EEINSIYKLNKSHISLLEEFGNIFKEL 367
            EE+ S++ ++KS  S   +FGN+F  L
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLL 1347


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 266 HYLVLPH--EEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMH 439
           H+L+  H   EI  +Y L  S     ++     ++      S ++   H I   +  +  
Sbjct: 317 HFLISDHIFSEIQKVYFLPSSQNDSFDDVVACLRQKSTPYLSFIKKARHLIQVSRDKYKL 376

Query: 440 VISTDMISTSLKTKIHWNSFCTKFFIPYDELLQEL 544
            IST+ I   + +++ W  F  K  + Y  L+QE+
Sbjct: 377 PISTEEIKPVVYSQVTWTEF-EKKLLRY--LVQEM 408


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 284 HEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 391
           H+ +N++ +  K  +  LEE G+  KEL EE++  +
Sbjct: 545 HKALNTLDEETKHQV--LEEIGDYVKELDEESKKAI 578


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 470 LKTKIHWNSFCTKFFIPYDELLQELKDIGNIRKIP 574
           L+T IH  +FC  FF     +    KD+   RK P
Sbjct: 3   LETLIHGVTFCVPFFSKSARIHTLSKDVFQQRKFP 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,807
Number of Sequences: 5004
Number of extensions: 44404
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)