Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B18
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.72
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 29 0.95
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 2.9
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c... 27 2.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 6.7
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 25 8.9
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 8.9
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 8.9
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 428 KEFGVHKDLQAYKALVDVLPKGKFIP 505
+EF V KD+ K +VD++P G+ IP
Sbjct: 3025 EEFAVEKDVFGEKTVVDLIPNGRNIP 3050
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 302 DPFANKPKKNKDTYLEAIKMFENQDNRRRGHVEFIYAALARMKE 433
D + NK K ++TY E + F+ +DN R E I R KE
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDNDLRRFHESINKLQDREKE 612
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 611 LEQMLLNVFGKRGIPLRKFWRMLY-WMPKFKNLSPWYL 721
LE +LLN G P K W LY ++ +FK LS ++L
Sbjct: 373 LENVLLNALGTIQSPDYKDWHDLYSYIERFKQLSLFFL 410
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +2
Query: 386 RGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPK--GKFIPSNIFQAEFMHYPKQQQCA 559
RG+ + A+ ++KE +H DL L D+L K + S + ++ + K A
Sbjct: 127 RGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDA 186
Query: 560 V------DLLEQMEDNKVMPDSELEQMLL 628
V DL E M K +P +E LL
Sbjct: 187 VLTLDQEDLNENMIGIKKVPGGAMEDSLL 215
>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 373 LIFKHF-DCFQICIFIFLWLISKRIIHSHFCV 281
LI+KH CFQ + I W + ++I +F +
Sbjct: 59 LIYKHTCRCFQQVVRIVYWFLGNQVIRENFSI 90
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 6.7
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Frame = +2
Query: 335 DTYLEAIKMFENQDNRRRGHVEFIYAALARMKEF-GVHKDLQAYK-ALVDVLPKGKFIPS 508
D + A++ + ++ A L +KEF + K+ + + L++++ K ++PS
Sbjct: 28 DVIVSAVEGTLKEQKTEATPTAYLVALLTLVKEFTDLKKNFKGHTFQLLELVIK--YVPS 85
Query: 509 NIFQAEFMHYPKQQQCAVDLLEQMEDNK--VMPD-SELEQMLL 628
N+ QA+F P+ ++ E NK ++P + LE++LL
Sbjct: 86 NVLQAKF---PQILSVLAPVVNNAETNKTVLLPYLNVLEKLLL 125
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +2
Query: 674 MLYWMPKFKNLSPWYLPDELPND 742
+ Y+ ++K++ PW D +P D
Sbjct: 124 LTYFYKQYKSIEPWLQNDNIPKD 146
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 554 CAVDLLEQMEDNKVMPDSELEQMLLNV 634
C +D + ++E + + DS LEQ+LL V
Sbjct: 156 CTIDKISRLEWREELHDSILEQLLLCV 182
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 251 HFMYRRWESSNTKVAVYDPFANKPKKNKDTYLEAIKMFENQDNRR 385
+ M R W +SNTK Y+ ++ ++ + E + FEN+ N R
Sbjct: 302 YMMNRGWRTSNTKQPSYEEIIDEVDA-ENRFDEDAEEFENKFNFR 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,422
Number of Sequences: 5004
Number of extensions: 62872
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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