Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B18
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 39 0.005
10_08_0370 - 17259802-17261595 31 0.75
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 31 0.75
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110... 30 2.3
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 30 2.3
10_07_0014 + 11800251-11800643,11800721-11801288,11801694-118017... 29 3.0
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 29 3.0
05_06_0270 - 26830231-26830394,26830489-26830681,26830853-268310... 29 3.0
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 29 3.0
01_06_1125 + 34683184-34684776 29 4.0
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 29 5.3
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 28 7.0
01_01_0354 + 2804640-2804703,2804911-2806451 28 7.0
07_03_1663 - 28449654-28451867 28 9.3
01_05_0048 - 17561963-17563585 28 9.3
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +2
Query: 347 EAIKMFENQDNRRRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFIPSNIFQAE 526
EA+ F RR E Y+ L + H + L D + +PSN A
Sbjct: 293 EAMDAFGEMKRRRFVPEEATYSLLISL--CAKHGKGEEALGLYDEMKVKSIVPSNYTCAS 350
Query: 527 FM--HYPKQQQC-AVDLLEQMEDNKVMPDSELEQMLLNVFGKRGI 652
+ +Y + A+ L +ME NK++PD + +L+ ++GK G+
Sbjct: 351 VLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGL 395
>10_08_0370 - 17259802-17261595
Length = 597
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 509 NIFQAEFMHYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVFGKRGI 652
NIF F Y Q A+D+LE+M N PD LLN K+G+
Sbjct: 384 NIFINYFCKYGHLDQ-AIDVLERMVINNCSPDIVTCNTLLNAISKKGM 430
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 31.5 bits (68), Expect = 0.75
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = +2
Query: 347 EAIKMFENQDNRRRGHVEFIYAALARMK-EFGVHKDLQAYKALVDVLPKGKFIPSNIFQA 523
E K+F NR +YA L + ++G +D A+ + + + + +IF
Sbjct: 314 EIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRD--AHDCVAALKAENLQLSPSIFCV 371
Query: 524 EFMHYPKQQQC--AVDLLEQMEDNKVMPDSELEQMLLNVFGKRG 649
Y +Q C V++L+ ME + P+ + +L+N FG G
Sbjct: 372 LANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAG 415
>08_02_0603 +
19208177-19210033,19210581-19210618,19210937-19211059,
19211471-19211852
Length = 799
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +2
Query: 389 GHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFIPSNIFQAEFMHYPKQQQCAVDL 568
G +E ++ +MK + D Y AL++ L K + I + A DL
Sbjct: 389 GELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITN----------------AQDL 432
Query: 569 LEQMEDNKVMPDSELEQMLLNVFGKRG 649
L +M+DN V P E L++ +G+ G
Sbjct: 433 LMEMQDNGVNPTVETFNTLIDAYGRTG 459
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 398 EFIYAALARMKEFGVHKDLQAYKALVDVLPK-GKFIPSNIFQAEFMHYPKQQQCAVDLLE 574
E + A LA MKE G+ ++ Y LVDV + G+F K+ AVD +E
Sbjct: 484 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRF--------------KE---AVDCIE 526
Query: 575 QMEDNKVMPDSELEQMLLNVFGKRGI 652
M+ + + P + L+N + +RG+
Sbjct: 527 AMKADGLKPSPTMYHALVNAYAQRGL 552
>10_07_0014 +
11800251-11800643,11800721-11801288,11801694-11801729,
11802908-11802911,11804142-11805108
Length = 655
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 257 MYRRWESSNTKVAVYDPFANKPKK-NKDTYLEAIKMFENQDNRRRGH 394
M + WESS V+ +P + P+ + L + N D+RRRGH
Sbjct: 329 MVKLWESS--LVSQSNPLMSNPRNLSMKMMLAGVPSLNNDDHRRRGH 373
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 509 NIFQAEFMHYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVFGK 643
N A F+ K ++CA +L++QM++ ++PD+ M+ ++ K
Sbjct: 721 NAVMACFVAKGKLRECA-ELVQQMQEGNILPDASTFGMIFSIMKK 764
>05_06_0270 -
26830231-26830394,26830489-26830681,26830853-26831069,
26831864-26831990,26831998-26832121
Length = 274
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 263 RRWESSNTKVAVYDPFANKPKKNKDTY--LEAIKMFENQDNRRRGHVEFIYAALARMKEF 436
RR ++ KVA+ NK + NK Y ++A+K Q N GHV F+ ++ +EF
Sbjct: 135 RRQANNYAKVAL--EHYNKDENNKIQYRFIKALKSCAIQTNESYGHVNFVASSSDSKEEF 192
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 344 LEAIKMFENQDNRRRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFIPSNIFQA 523
LEA +++N Y +L R G H +QA + +V +L K I
Sbjct: 596 LEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL-VQAKEFMVYLLEKACAIDEKTLNT 654
Query: 524 EFMHYPKQQQC--AVDLLEQMEDNKVMPDSELEQMLLNVFGKRG 649
+ K A+DL E+M ++PD+ +LL+ F KRG
Sbjct: 655 LLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRG 698
>01_06_1125 + 34683184-34684776
Length = 530
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 383 RRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFI 502
+ G ++ + RMKE GV D + Y A+V L KG+ +
Sbjct: 298 KAGSLDTVMKLFNRMKEAGVIPDRKIYNAVVYALAKGQCV 337
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 428 KEFGVHKDLQAYKALV--DVLPKGKFIPSNIFQAEFMHYPKQQQCAVDLLEQMED 586
K+ G D+ + +V PKGKFI +AE H + + +DLL Q+++
Sbjct: 325 KQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAETDHPESELKPGIDLLGQVDE 379
>03_02_0990 -
13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 239 LPSSHFMYRRWESSNTKVAVYDPFANKPKKNKDTYLEAIKMFE 367
LP + ++Y W + TK AV F N P + + + + E
Sbjct: 135 LPLAAYLYNPWSTQQTKPAVRSDFNNYPPHSSNHHWMEVSYLE 177
>01_01_0354 + 2804640-2804703,2804911-2806451
Length = 534
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 347 EAIKMFENQDNRRRGHVEFIYAALARMKEF-GVHKDLQAYKALVDVLPKGKFIPSNIFQA 523
EA+++F ++R Y L +K F +++ + Y+ L D+ KG P+N+ +
Sbjct: 340 EALEIFGEMNDRGCQADVATYNTL--IKHFCKINRMEKVYELLDDMEVKG-VSPNNMTYS 396
Query: 524 EFMHYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVF 637
+ ++ + + L+++ME + DS+ ++LN++
Sbjct: 397 YILKTTEKPKDVISLMQRMEKSGCRLDSDTYNLILNLY 434
>07_03_1663 - 28449654-28451867
Length = 737
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 557 AVDLLEQMEDNKVMPDSELEQMLLNVFGKRG--IPLRKFWRMLYW 685
A++ LE+M+ + V+PDS +++ F G + FW + W
Sbjct: 473 AMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVIW 517
>01_05_0048 - 17561963-17563585
Length = 540
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 422 RMKEFGVHKDLQAYKALVDVLPKGK 496
+M FG+ DL Y L+D+L K K
Sbjct: 213 KMSSFGLKTDLSDYNWLIDILSKSK 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,795
Number of Sequences: 37544
Number of extensions: 353551
Number of successful extensions: 899
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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