Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B17
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    26   5.0  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   6.6  

>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 323 GFQPKTSLGQK*KPQKPVYINNTPSQHKLDNDFV 424
           G  P   +G++  P     + N P++HKL  DF+
Sbjct: 10  GLIPADGIGKEVVPAARRLMENLPAKHKLKFDFI 43


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 357 YFWPNEVLGWKPLGPAVKVTV*CLPSGAT*AYCPVTVRAAFSDC 226
           YF  N +L    +  A + T+ C+PS A    C VT      +C
Sbjct: 456 YFGRNVILKGNIVIVASENTILCIPSNAVLENCVVTGNCKIMEC 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,019
Number of Sequences: 5004
Number of extensions: 46716
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)