Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B17
         (615 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127649-1|AAI27650.1|  140|Homo sapiens transmembrane protein 1...    31   3.2  
BC070231-1|AAH70231.1|  139|Homo sapiens TMEM107 protein protein.      31   3.2  
AY358525-1|AAQ88889.1|  140|Homo sapiens GRVS638 protein.              31   3.2  

>BC127649-1|AAI27650.1|  140|Homo sapiens transmembrane protein 107
           protein.
          Length = 140

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 244 SCILGLWVVEFAFFLSGCTITSXVRKAVAIGFH 146
           S  LGL+ VE A FLSG ++ +  +  ++IG H
Sbjct: 58  SVTLGLFAVELAGFLSGVSMFNSTQSLISIGAH 90


>BC070231-1|AAH70231.1|  139|Homo sapiens TMEM107 protein protein.
          Length = 139

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 244 SCILGLWVVEFAFFLSGCTITSXVRKAVAIGFH 146
           S  LGL+ VE A FLSG ++ +  +  ++IG H
Sbjct: 64  SVTLGLFAVELAGFLSGVSMFNSTQSLISIGAH 96


>AY358525-1|AAQ88889.1|  140|Homo sapiens GRVS638 protein.
          Length = 140

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 244 SCILGLWVVEFAFFLSGCTITSXVRKAVAIGFH 146
           S  LGL+ VE A FLSG ++ +  +  ++IG H
Sbjct: 58  SVTLGLFAVELAGFLSGVSMFNSTQSLISIGAH 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,521,545
Number of Sequences: 237096
Number of extensions: 1795991
Number of successful extensions: 5274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5274
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)