Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B17
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23520-3|AAC46555.2|  470|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23520-2|AAR25655.1|  485|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    28   6.1  
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    28   6.1  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   8.1  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   8.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   8.1  

>Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical
           protein F44G3.7 protein.
          Length = 705

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 26  THPHA-VCFNPCQSLACWSPFAQVLHNK 106
           T PH  +CFNP Q++  W+    + +NK
Sbjct: 224 TAPHTNMCFNPLQAIRAWALLGTLANNK 251


>U23520-3|AAC46555.2|  470|Caenorhabditis elegans Hypothetical
           protein C35B8.3a protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 96  STTKSPSLFSFYVLTATWNPMATALRTXLVMVHPDK 203
           S +K  SL+       + N +A ALR  L +VHPDK
Sbjct: 4   SPSKQKSLWEISKRCISSNEVAQALRPFLFLVHPDK 39


>U23520-2|AAR25655.1|  485|Caenorhabditis elegans Hypothetical
           protein C35B8.3b protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 96  STTKSPSLFSFYVLTATWNPMATALRTXLVMVHPDK 203
           S +K  SL+       + N +A ALR  L +VHPDK
Sbjct: 19  SPSKQKSLWEISKRCISSNEVAQALRPFLFLVHPDK 54


>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 283 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 182
           V  Y+ ++  N  +C++ + +    F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 283 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 182
           V  Y+ ++  N  +C++ + +    F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 164  SFAYXTSDGTS--RQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 289
            S ++ T DG +  + +EGK   P  +   +  +G Y Y  V PDG+
Sbjct: 7870 SGSFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7915


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 164  SFAYXTSDGTS--RQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 289
            S ++ T DG +  + +EGK   P  +   +  +G Y Y  V PDG+
Sbjct: 7915 SGSFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 164  SFAYXTSDGTS--RQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 289
            S ++ T DG +  + +EGK   P  +   +  +G Y Y  V PDG+
Sbjct: 7915 SGSFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,585
Number of Sequences: 27780
Number of extensions: 275883
Number of successful extensions: 746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)