Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B17
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    44   9e-07
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 44.4 bits (100), Expect = 9e-07
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 155 DG-YSFAYXTSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQ 331
           DG Y   + TS+G S QE G+     +E   ++  G  +Y APDG+  ++T+ A  NGFQ
Sbjct: 39  DGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQ 97

Query: 332 PKTS 343
            + S
Sbjct: 98  VQGS 101


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 448 IIYPCHVQ*QKQFLISRAIWTLSFICTF 531
           + YP  +  ++  L+   +W LSF+  F
Sbjct: 171 VSYPQIMSPRRARLLVATVWILSFVICF 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,948
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)