Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B17
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    30   1.4  
At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putati...    30   1.4  
At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putati...    30   1.4  
At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At2g47160.1 68415.m05889 anion exchange family protein contains ...    27   9.9  

>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 137 DSNVEPDGYSFAYXTSDGTSRQEEGKLDNPQSENAALTVTGQY 265
           D+++E D   + Y T      +E  ++DNPQ E       G+Y
Sbjct: 390 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432


>At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putative
           / 3-hydroxy-3-methylglutarate-CoA lyase, putative /
           HMG-CoA lyase, putative similar to SP|P35915
           Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
           lyase) {Gallus gallus}; contains Pfam profile PF00682:
           HMGL-like
          Length = 468

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = -3

Query: 298 SVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSGCTITSXVRKAV-AIGFHVAVKT*KL 122
           +++++++  +SI+ S+    I GL    +A   SG   T  V   +  +G H  V   KL
Sbjct: 379 NILVSLQMGISIVDSS----IAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKL 434

Query: 121 NRLGDFVVEHLSKGRPARKRLA---RIEADCVRM 29
              GDF+ +HL +   ++  +A   RI AD  ++
Sbjct: 435 IAAGDFISKHLGRPNGSKAAVALNRRITADASKI 468


>At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putative
           / 3-hydroxy-3-methylglutarate-CoA lyase, putative /
           HMG-CoA lyase, putative similar to SP|P35915
           Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
           lyase) {Gallus gallus}; contains Pfam profile PF00682:
           HMGL-like
          Length = 433

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = -3

Query: 298 SVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSGCTITSXVRKAV-AIGFHVAVKT*KL 122
           +++++++  +SI+ S+    I GL    +A   SG   T  V   +  +G H  V   KL
Sbjct: 344 NILVSLQMGISIVDSS----IAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKL 399

Query: 121 NRLGDFVVEHLSKGRPARKRLA---RIEADCVRM 29
              GDF+ +HL +   ++  +A   RI AD  ++
Sbjct: 400 IAAGDFISKHLGRPNGSKAAVALNRRITADASKI 433


>At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 322 VGSRCESDSVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSG 194
           +GS C    + LA++    +LS NCQ  ++   ++  A  L G
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242


>At2g47160.1 68415.m05889 anion exchange family protein contains
           some similarity to SWISS-PROT:P04919 anion transport
           protein (anion exchange protein 1) [Mouse] {Mus
           musculus}
          Length = 704

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 443 SRSLSCLQNHCLTYVETEYYLCTQVFGVFTSGPMRFWVGSRWVPL 309
           SR    L+++  T+VET  +    +F +F +  +    G  W+P+
Sbjct: 521 SRRFKVLEDYHATFVETVPFKTIAMFTLFQTTYLLICFGLTWIPI 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,404
Number of Sequences: 28952
Number of extensions: 250878
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)