Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B16
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   5.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.7  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 350 IFICFKCREIFIWSKI 397
           IF+ F   E F+W++I
Sbjct: 120 IFVLFHTYEAFVWTRI 135


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 198 RHLGSMVECALRPYVLAVCKTFHIDNCNKLIIDIV 302
           RH GS+++    P + A+ ++   +NC     DIV
Sbjct: 140 RHDGSVIKNQGMPTMEAIARSGIWENCRAAYEDIV 174


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 595 IPKAVMMNQIALICNQ 642
           IP+ V++N +  ICN+
Sbjct: 447 IPQGVVLNPLDAICNK 462


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 615 HHHCFGNQRIHHH 577
           HHH  G+   HHH
Sbjct: 14  HHHQSGSVAGHHH 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,979
Number of Sequences: 336
Number of extensions: 3865
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)