Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B16
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   1.8  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   4.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.5  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 660 HGIDHSEIKTLNLDVTTMMAYVSNMTNGHHN 752
           HGI H  + T+ L V T   Y  ++TN HHN
Sbjct: 216 HGI-HIIVGTILLLVATYNIYTYHLTNTHHN 245


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 350 FWISCYHFGPCIALIPNNVYY 288
           F I+CYH+  C++L+   ++Y
Sbjct: 66  FTIACYHYSLCLSLVALLLFY 86


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 699  DVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSW 794
            +  T++A   N+TN    +   Q++LTQ   W
Sbjct: 1081 EAKTVLAESENLTNKPEEYTVAQKLLTQTYEW 1112


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 624 CINMQSKIPELNHGIDHSEIK 686
           C++ Q KI ELN  ID  ++K
Sbjct: 582 CVSFQEKINELNSQIDELKLK 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,848
Number of Sequences: 5004
Number of extensions: 62819
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)