Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B16
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0640 - 4836004-4836210,4837132-4837215 31 1.1
09_02_0546 - 10454404-10455687 30 1.9
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157... 30 1.9
10_02_0188 - 6473353-6473432,6473619-6474816 30 2.5
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 29 3.3
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 29 4.3
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 4.3
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 7.5
>01_01_0640 - 4836004-4836210,4837132-4837215
Length = 96
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 686 NSKLGCNNHDGICEQHDKWPSQFYL 760
N G DGIC HDKW QF L
Sbjct: 59 NDTDGNRGRDGICPSHDKWYLQFIL 83
>09_02_0546 - 10454404-10455687
Length = 427
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 126 QRNRN**LEKSKNFKLEQLACSNLRHLGSMVECALRPYVLAVCKTFHIDNCNK 284
QRNRN EK K E + C N + +G + +P +A + H CN+
Sbjct: 294 QRNRN---EKRKCRVREDICCFNCQGMGHFADKCPKPRNIAASTSVHATPCNQ 343
>06_03_0714 -
23814826-23814997,23815080-23815164,23815680-23815791,
23817203-23817304,23817375-23817447,23817918-23817997,
23818076-23818267,23818945-23819064,23819157-23819244,
23819319-23819353,23819447-23819518,23819860-23819931,
23820054-23821189,23822011-23822362
Length = 896
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 624 CINMQSKIPELNHGIDHSEIKTLNLDVTTMMAYVSNMTN 740
C+++ S + E N + H +++N+D + + VSN T+
Sbjct: 468 CVSLSSSMMEENQSVTHGNQQSINVDWNKVASMVSNATS 506
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 126 QRNRN**LEKSKNFKLEQLACSNLRHLGSMVECALRPYVLAVCKTFHIDNCNK 284
QRN+N EK K E + C N + +G + RP +A + H CN+
Sbjct: 284 QRNQN---EKRKCRVREDICCFNCQGMGHFADKCPRPRNIAASTSVHATPCNQ 333
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 660 HGIDHSEIKTLNLDVTTMMAYVS--NMTNGHHNFIFKQEVLTQQ 785
HG DH++++ + + + ++Y+ N NF+FK + + Q+
Sbjct: 515 HGADHTKVRAYEILIFSFISYMCKFNFLTSVQNFVFKDDNMEQK 558
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 270 DNCNKLIIDIVGDQGNTWTKVIARNP 347
D+ +L+ID+ GN W+K+ AR P
Sbjct: 72 DDEERLVIDLHAQLGNRWSKIAARLP 97
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -2
Query: 381 KISLHLKQIKILDFLLSLWSMYCLDPQQCLLLVYYSYLCEMFYTQRAH 238
++SL + + ++ + L SM P+ +L+VYY+ L E+F+ H
Sbjct: 243 ELSLWQEAFRSVEDIHGLMSMVKKTPKPSVLVVYYAKLTEIFWISDCH 290
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 282 KLIIDIVGDQGNTWTKVIARNP 347
KL+ID+ GN W+K+ AR P
Sbjct: 1763 KLVIDLHEQLGNRWSKIAARLP 1784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,643,600
Number of Sequences: 37544
Number of extensions: 377735
Number of successful extensions: 826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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