Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B16
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    28   6.8  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 9/193 (4%)
 Frame = +3

Query: 246 AVCKTFHIDNCNKLIIDIVGDQGNTWTKVIARNPXXXXXXXXXXXXXXARSILDQADDYL 425
           AV KTF  DN + + +DIV  + N W K++ R P                 ++ Q   +L
Sbjct: 87  AVLKTFKRDNVS-VTVDIVMKEPNVWIKLVNR-PAKTVLIEYRDGKRNG-DVIAQIKQHL 143

Query: 426 KCSKLYPCMYQPPKVVFEFMSGIEENLANKLRAVGIFVKGEILPNSIVXXXXXXXXXXXX 605
             S+     +  P++   F +G+   +A KL   GI V GE +  S              
Sbjct: 144 FVSR----RFNRPQIRIYFRNGVLAEMAQKLIRHGIVVIGEHVDKSDPSLRGKWNEELIE 199

Query: 606 XXXXXNCINMQ------SKIPELNHGIDHSE--IKTLNLDVTTMMAYVSNMTN-GHHNFI 758
                   +        + IP L      SE  +  LNLD++ +M  VSNM   G  N+ 
Sbjct: 200 RLGEEEDSDWDEVDEDAASIPTLPSSQSQSESTLPRLNLDISAVMLLVSNMCEPGGVNYQ 259

Query: 759 FKQEVLTQQCSWE 797
           FK+E++ +    E
Sbjct: 260 FKEEMINKHVECE 272


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 740 ICHVAHICHHGC--YIQV*SFY 681
           IC + HICH GC  Y Q+  F+
Sbjct: 18  ICAIEHICHRGCGSYAQIFIFH 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,311,526
Number of Sequences: 27780
Number of extensions: 348844
Number of successful extensions: 831
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)