Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B13
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 48 7e-06
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 44 2e-04
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 32 0.38
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 29 3.5
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 29 3.5
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 6.2
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 6.2
U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 48.0 bits (109), Expect = 7e-06
Identities = 38/144 (26%), Positives = 64/144 (44%)
Frame = +2
Query: 269 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 448
++ L SY YL + YF+ AK F++ SD+ E L++ RGG++
Sbjct: 21 NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQD 80
Query: 449 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 628
+ D E G + A AL +K E + +H + +DA +T +I
Sbjct: 81 IQKPEND-------EWGTALKAFEAALALEKFNNESLLKLHSTAGNH----NDAHLTDFI 129
Query: 629 EEEFVSXQADTIRXLAGHTSDLKR 700
EE+++ Q +I A ++LKR
Sbjct: 130 EEKYLDEQVKSINEFARMVANLKR 153
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 43.6 bits (98), Expect = 2e-04
Identities = 35/141 (24%), Positives = 64/141 (45%)
Frame = +2
Query: 278 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 457
L SY YL +++F+ AK F++ SD+ L++ RGG++ +
Sbjct: 24 LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNI 81
Query: 458 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 637
K +K E G + A AL ++ + +H + +D A +T YI+E+
Sbjct: 82 QKPEKD-----EWGTVLEAFEAALALERANNASLLKLHGIAEQRND----AHLTNYIQEK 132
Query: 638 FVSXQADTIRXLAGHTSDLKR 700
++ Q +I A H +++KR
Sbjct: 133 YLEEQVHSINEFARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 572 REVTKNSDLLHDAEITQYIEEEFVSXQADTIRXLAGHTSDLKRFITXNNGKD 727
+ V K ++LH Q EE F + TIR A +DLK+F D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 575 EVTKNSDLLHDAEITQYIEEEFVSXQADTIRXLAGHTSDLKRFITXNNGK 724
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 575 EVTKNSDLLHDAEITQYIEEEFVSXQADTIRXLAGHTSDLKRFITXNNGK 724
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 142 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 237
GRLML ++ M+T DFKSA L L P+ +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +2
Query: 437 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 616
D S+HTT S TVE H++ ++A ++ T + E + FI + + + L+ A
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682
Query: 617 TQYIEEEFVSXQ-ADTIRXLAGHTSDLKRFITXNNG 721
T + E S + A+ IR + + ++ +G
Sbjct: 683 TGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHG 718
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 6.2
Identities = 32/150 (21%), Positives = 63/150 (42%)
Frame = +2
Query: 140 EEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYF 319
+ D+C NV + +L CS G+F+ + +E+K+ + L ++ +
Sbjct: 50 DSDNCSFNVHYITKESLFPTECSQIIGRFRIDQ--NSEMKSEQLITLFKNVLQIRGVLQI 107
Query: 320 NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVG 499
N Q F K + ++ D +K + ++ + TK ++ SS + SN VE+
Sbjct: 108 WNTQLTSAPFMKNIQNITGDPLDKGLSILNN-TKL-NNLNISSLS------NSNNIVEIK 159
Query: 500 HEIGALAKALDTQKQLAERIFFIHREVTKN 589
+ L + +FF R ++KN
Sbjct: 160 NNPNL---NLQKMCSIIHEVFFTRRSISKN 186
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 6.2
Identities = 32/150 (21%), Positives = 63/150 (42%)
Frame = +2
Query: 140 EEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYF 319
+ D+C NV + +L CS G+F+ + +E+K+ + L ++ +
Sbjct: 50 DSDNCSFNVHYITKESLFPTECSQIIGRFRIDQ--NSEMKSEQLITLFKNVLQIRGVLQI 107
Query: 320 NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVG 499
N Q F K + ++ D +K + ++ + TK ++ SS + SN VE+
Sbjct: 108 WNTQLTSAPFMKNIQNITGDPLDKGLSILNN-TKL-NNLNISSLS------NSNNIVEIK 159
Query: 500 HEIGALAKALDTQKQLAERIFFIHREVTKN 589
+ L + +FF R ++KN
Sbjct: 160 NNPNL---NLQKMCSIIHEVFFTRRSISKN 186
>U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical
protein F20D12.7 protein.
Length = 158
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 361 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 266
EE+ E V LV++ +GGR +VGT ++ G
Sbjct: 87 EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,159
Number of Sequences: 27780
Number of extensions: 316701
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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