Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B12
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    31   0.20 
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   1.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   5.6  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   7.5  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 438 NWCRLAKTAAVNVEPLLPPHPTSITPTLPTLR*VLMLK 325
           NW R+AKT   +V P  P  PTS   TLP +  V+  K
Sbjct: 521 NWNRIAKTPVSSV-PSSPVQPTSYNRTLPPMPEVVAYK 557


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 182 EMEKTPNLVIVSPNVKYSD 238
           +ME T N+ IVSP++K SD
Sbjct: 160 QMENTANITIVSPSLKESD 178


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 179 FEMEKTPNLVIVSPNVKYSDDFIYADYEYNETLVKKIDNQLV 304
           F +  TP+LVI S ++ Y  D +   Y+  +TL   + +Q +
Sbjct: 353 FPIISTPSLVISSNSILYPKDSLDQIYDSTKTLTWALASQWI 394


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 248 YADYEYNETLVKKIDNQLVAQPYSKTLSIRTQ 343
           Y DY+YNETL ++    +++  + +T   R Q
Sbjct: 3   YEDYQYNETLTQEDCWTVISSFFEETSLARQQ 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,264
Number of Sequences: 5004
Number of extensions: 56745
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)