Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B12
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0135 + 11108769-11108953,11109151-11109219,11109932-111100... 155 4e-38
04_04_0261 + 24007790-24009098,24009191-24011118 32 0.48
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 30 1.5
01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114... 29 3.3
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 4.4
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 29 4.4
11_01_0805 - 7166265-7166759 28 5.9
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 28 5.9
04_03_0726 + 19045661-19045724,19046380-19046453,19046909-190469... 28 5.9
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 28 5.9
03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301 28 7.7
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 7.7
>10_06_0135 +
11108769-11108953,11109151-11109219,11109932-11110067,
11110632-11110879,11111329-11111555,11111665-11111780,
11111875-11112051,11112459-11112647,11112754-11112816,
11113239-11113358
Length = 509
Score = 155 bits (375), Expect = 4e-38
Identities = 76/156 (48%), Positives = 102/156 (65%), Gaps = 3/156 (1%)
Frame = +2
Query: 209 IVSPNVKYSDDFIYADYEYNETLV---KKIDNQLVAQPYSKTLSIRTQRKVGKVGVMLVG 379
+ SP V+Y D I ++Y Y+ T V + V +P S T +T V K+GVMLVG
Sbjct: 8 VESPRVRYGDGEIESEYRYDTTEVVAPPSPEKGWVVRPKSVTYHFKTTTTVPKLGVMLVG 67
Query: 380 WGGNNGSTFTAAVLANRHQLSWNTKNGSLDANWFGSITQASTVRLGLDEKGNDVNVPMNS 559
WGGNNG+T TA V+ANR +SW TK AN+FGS+TQ+ST+R+G G ++ P S
Sbjct: 68 WGGNNGTTLTAGVIANREGISWATKEKVHKANYFGSLTQSSTIRVG-SYNGEEIYAPFKS 126
Query: 560 LLPMVNPDDLFIDGWDISPLNXAESMARAKVLDYDL 667
L+PMVNP+D+ GWDIS +N A++M RA+VLD DL
Sbjct: 127 LVPMVNPNDIVFGGWDISSMNLADAMTRARVLDIDL 162
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 311 PYSKTLSIRTQRKVGKVGVMLVGWGGNNGSTFTAAVLANRHQLSWNTKNGSLDANWFGSI 490
P + L +R+ + G VG + V G N + F++ + + L+ N +GSL WF S+
Sbjct: 812 PKLRVLVLRSNKFFGAVGGIPVDNGDRNRTQFSSLQIID---LASNNFSGSLQPQWFDSL 868
Query: 491 TQASTVRLGLDEKGNDVNV 547
R G K + N+
Sbjct: 869 KAMMVTREGDVRKALENNL 887
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 455 SLCSRTTGVGWPKQPQ*MLNHCCHPIPLASLQLCQLYA 342
++C R G+ W KQP+ + CC + +A ++L +A
Sbjct: 1180 NICFRKEGLHWSKQPR-TVQACCKEVLVADIRLANRHA 1216
>01_01_0124 -
1145105-1145320,1145480-1145611,1146485-1146562,
1147022-1147199,1147269-1147441,1147531-1147632,
1147717-1147794,1148178-1148259,1148343-1148405,
1150196-1150275,1150529-1150723,1150812-1151073,
1151566-1151720,1151799-1151865,1151956-1152179,
1152322-1152451,1153228-1153284,1153396-1153527,
1153758-1154086
Length = 910
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 398 STFTAAVLANRHQLSWNTKNGSLDANWFGSITQASTVRLGLDEKGNDVNVPMNSLLPMVN 577
+++ +L + +L W + NW G A +D++G+D+ N L+
Sbjct: 226 TSYADRLLEDLDELDWPESIKEMQRNWIGRSEGAELEFSAVDKEGHDLGA--NLLVYTTR 283
Query: 578 PDDLF 592
PD +F
Sbjct: 284 PDTIF 288
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 426 LAKTAAVNVEPLLPPHPTSITPTLP 352
L T A+ V P LPP P + P+LP
Sbjct: 94 LPPTPAIAVPPALPPIPAIVPPSLP 118
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 393 LLPPHPTSITPTLPT 349
+LP HP+SI PTLPT
Sbjct: 1382 MLPNHPSSIGPTLPT 1396
>11_01_0805 - 7166265-7166759
Length = 164
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 435 WCRLAKTAAVNVEPLLPPHPTSITPTL 355
WC A N++ LPP PTS + TL
Sbjct: 92 WCSGAGQCVQNMQDELPPSPTSASSTL 118
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 560 LLPMVNPDDLFIDGWDISPLNXAESM 637
L P+VN D F+ GW+ S L+ AE +
Sbjct: 1240 LQPLVNKVDGFLSGWEASLLSQAERL 1265
>04_03_0726 +
19045661-19045724,19046380-19046453,19046909-19046970,
19047052-19047151,19047751-19047786,19047951-19048025,
19048124-19048219
Length = 168
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 524 EKGNDVNVPMNSLLPMVNPDDL-FIDGWDISPLNXAESMARAKVLDYDL 667
EKG D +VP + N DD+ ID DIS LN + ++L+ +L
Sbjct: 45 EKGKDFHVPKETTDKGSNDDDMRSIDETDISTLNMDQLSQIERLLEDEL 93
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 362 GVMLVGWGGNNGSTFTAAVLANRHQLSW-NTKNGSLDANWFG 484
G++L G G G T A +AN Q S+ N ++ + WFG
Sbjct: 544 GILLFGPPGT-GKTMLAKAIANEAQASFINVSMSTITSKWFG 584
>03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301
Length = 155
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 554 NSLLPMVNPDDLFIDGWD 607
N++LP+ NPD+ ID W+
Sbjct: 71 NNVLPVYNPDERLIDWWE 88
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 313 RLCH*LIVDFFH*C--FVILVIGVNKIIRIFHIRTDYNQIWCFFHLELVYIGKLNT 152
+LCH ++D C V L GVN +I I H+ D + + + YIGKL +
Sbjct: 840 KLCHLQVLDVRS-CKNLVKLPTGVNNLISIRHLLVDASSKLLAGYAGISYIGKLTS 894
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,929
Number of Sequences: 37544
Number of extensions: 334896
Number of successful extensions: 822
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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