Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B12
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69902-12|CAA93771.2| 525|Caenorhabditis elegans Hypothetical p... 133 1e-31
AL033535-2|CAA22132.2| 525|Caenorhabditis elegans Hypothetical ... 133 1e-31
Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical pr... 32 0.42
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL033513-2|CAA22079.2| 439|Caenorhabditis elegans Hypothetical ... 28 6.9
AL021446-4|CAA16267.2| 439|Caenorhabditis elegans Hypothetical ... 28 6.9
U50313-3|AAA92327.1| 335|Caenorhabditis elegans Cysteine protea... 27 9.1
L39926-1|AAA98783.1| 335|Caenorhabditis elegans cathepsin B-lik... 27 9.1
L39895-1|AAA98785.1| 335|Caenorhabditis elegans cathepsin B-lik... 27 9.1
>Z69902-12|CAA93771.2| 525|Caenorhabditis elegans Hypothetical
protein VF13D12L.1 protein.
Length = 525
Score = 133 bits (321), Expect = 1e-31
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Frame = +2
Query: 203 LVIVSPNVKYSDDFIYADYEYNETLVKKIDNQLVAQPYSKTLSIRTQRKVGKVGVMLVGW 382
L++ SPNVK D + + + Y + + + L P S +T K K G++LVG
Sbjct: 13 LIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGL 72
Query: 383 GGNNGSTFTAAVLANRHQLSWNTKNGSLDANWFGSITQASTVRLGLDE-KGNDVNVPMNS 559
GGNNGST ++ AN++ ++W TK G AN+FGS+TQ +TV LG D N + VP
Sbjct: 73 GGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKD 132
Query: 560 LLPMVNPDDLFIDGWDISPLNXAESMARAKVLDYDL 667
++P+++P+DL I GWDIS N E+M RAKV + +L
Sbjct: 133 IVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPEL 168
>AL033535-2|CAA22132.2| 525|Caenorhabditis elegans Hypothetical
protein VF13D12L.1 protein.
Length = 525
Score = 133 bits (321), Expect = 1e-31
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Frame = +2
Query: 203 LVIVSPNVKYSDDFIYADYEYNETLVKKIDNQLVAQPYSKTLSIRTQRKVGKVGVMLVGW 382
L++ SPNVK D + + + Y + + + L P S +T K K G++LVG
Sbjct: 13 LIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGL 72
Query: 383 GGNNGSTFTAAVLANRHQLSWNTKNGSLDANWFGSITQASTVRLGLDE-KGNDVNVPMNS 559
GGNNGST ++ AN++ ++W TK G AN+FGS+TQ +TV LG D N + VP
Sbjct: 73 GGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKD 132
Query: 560 LLPMVNPDDLFIDGWDISPLNXAESMARAKVLDYDL 667
++P+++P+DL I GWDIS N E+M RAKV + +L
Sbjct: 133 IVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPEL 168
>Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical
protein F20D1.2 protein.
Length = 641
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 446 NTKNGSLDANWFGSITQASTVRLGLDEKGNDVNVPMNSLLPMVNPDDLFIDGWD 607
NT SLD NW + S+ LD +GND + M L + P+ L D WD
Sbjct: 9 NTSFSSLDDNWETDVNVLSSELGDLDTEGNDKSDWMRLLGVSMKPNPL--DDWD 60
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 362 GVMLVGWGGNNGSTFTAAVLANRHQLSWNTKNGSLDANWFG 484
G++L G GN + AV Q+ +N SL + W G
Sbjct: 213 GILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVG 253
>AL033513-2|CAA22079.2| 439|Caenorhabditis elegans Hypothetical
protein Y70D2A.1 protein.
Length = 439
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 134 IMVGVVRESLINTTILHTLLSKQIIPGRY*NIEIILDILNKFS 6
I+ G+V + L T+ H LL K I Y + + D+L +FS
Sbjct: 48 IIFGIVGDVLTVVTLTHPLLRKSSIIYTYLTLLAMTDLLTQFS 90
>AL021446-4|CAA16267.2| 439|Caenorhabditis elegans Hypothetical
protein Y70D2A.1 protein.
Length = 439
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 134 IMVGVVRESLINTTILHTLLSKQIIPGRY*NIEIILDILNKFS 6
I+ G+V + L T+ H LL K I Y + + D+L +FS
Sbjct: 48 IIFGIVGDVLTVVTLTHPLLRKSSIIYTYLTLLAMTDLLTQFS 90
>U50313-3|AAA92327.1| 335|Caenorhabditis elegans Cysteine protease
related protein 4 protein.
Length = 335
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 338 TQRKVGKVGVMLVGWGGNNGSTFTAAVLANRHQLSWNTKNG 460
T +++G + ++GWG +NG+ + ++AN ++W +NG
Sbjct: 274 TGQELGGHAIRILGWGTDNGTPYW--LVANSWNVNWG-ENG 311
>L39926-1|AAA98783.1| 335|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 335
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 338 TQRKVGKVGVMLVGWGGNNGSTFTAAVLANRHQLSWNTKNG 460
T +++G + ++GWG +NG+ + ++AN ++W +NG
Sbjct: 274 TGQELGGHAIRILGWGTDNGTPYW--LVANSWNVNWG-ENG 311
>L39895-1|AAA98785.1| 335|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 335
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 338 TQRKVGKVGVMLVGWGGNNGSTFTAAVLANRHQLSWNTKNG 460
T +++G + ++GWG +NG+ + ++AN ++W +NG
Sbjct: 274 TGQELGGHAIRILGWGTDNGTPYW--LVANSWNVNWG-ENG 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,973
Number of Sequences: 27780
Number of extensions: 314543
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -