Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B11
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    72   4e-14
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   0.53 

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 71.7 bits (168), Expect = 4e-14
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
 Frame = +1

Query: 76  PRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKM-YVVCGAIRRMGESDDCIVRL 252
           PR CSA+NR+I AKDHASVQ+ +  V  A GR     K  Y + G +R  GESDDCI RL
Sbjct: 14  PRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDCINRL 72

Query: 253 TKKDGIL 273
           T +DG+L
Sbjct: 73  TTQDGLL 79


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 140 TSCTEAWSLAWMRRLLAEHXLGQGQXNECTGGVXHLRWTSNTDTEL 3
           T  T  W +   R++L    LG    +  TG V  + W  N  T L
Sbjct: 184 TEYTTVWDVKLKRQVLNLSYLGAAGVSAATGAVNSIAWHPNNATRL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,649
Number of Sequences: 5004
Number of extensions: 20820
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)