Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B11
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     50   1e-06
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    48   3e-06

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 27/62 (43%), Positives = 36/62 (58%)
 Frame = +1

Query: 76  PRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIRRMGESDDCIVRLT 255
           PR CSA+NR+I AKDHASVQ+ I  V    G        + + G IR  G++D  + RL 
Sbjct: 14  PRKCSATNRIITAKDHASVQINIGHV-DENGLYDGRFTTFALSGFIRAQGDADSALDRLW 72

Query: 256 KK 261
           +K
Sbjct: 73  QK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 26/62 (41%), Positives = 35/62 (56%)
 Frame = +1

Query: 76  PRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIRRMGESDDCIVRLT 255
           PR CS +NR+I AKDHASVQ+ I  V    G        + + G IR  G++D  + RL 
Sbjct: 14  PRKCSTTNRIITAKDHASVQINIGHV-DENGLYDGRFTTFALSGFIRAQGDADSALDRLW 72

Query: 256 KK 261
           +K
Sbjct: 73  QK 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,656,841
Number of Sequences: 37544
Number of extensions: 164426
Number of successful extensions: 360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)