Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B11
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   29   1.2  
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   2.2  
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)               28   3.8  
SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)               27   5.0  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   6.6  

>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 1   VNSVSVLDVHLKCXTPPVHSLXCPCPRXCSASNRLIHAKDH 123
           V++ ++ D +LK   PP       CP+ CSA     H   H
Sbjct: 816 VSAAALADNYLKLTLPPQPHTAAVCPQPCSAPTLCYHTGCH 856


>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 834

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 8   PCPCWTSISNAXRRRCIRXLVLARGNARPATASSTLRTM 124
           P P  T+I N   +      V A  N RPA ASS +R +
Sbjct: 769 PGPTITAIDNDTHKYVAMETVPAEANERPAAASSAVRIL 807


>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
          Length = 491

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 170 RPVAGXTSAITSCTEAWSLAWMRRLLAEHXLGQGQXNECTG 48
           +   G T +ITS T + SL W    + ++  G G   E  G
Sbjct: 152 KQTTGTTPSITSATASASLKWQVHQILDYVSGGGDDGEGNG 192


>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
          Length = 812

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  SVLDVHLKCXTPPVHSLXCPCPRXCSA 93
           SV  ++ +C TPP+  +  P P   SA
Sbjct: 781 SVFSIYSRCLTPPITPILLPTPSRVSA 807


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 136 LVIADVXPATGRAADTSKMYVVCGAI 213
           L++AD+ P T        +Y++C  I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,404
Number of Sequences: 59808
Number of extensions: 175556
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)