Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B11
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    88   3e-18
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = +1

Query: 76  PRXCSASNRLIHAKDHASVQLVIADVXPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRL 252
           PR CS+SNR+I  KDHASVQ+   DV P TGR     S  Y +CGAIRRMGESDD I+RL
Sbjct: 14  PRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRL 73

Query: 253 TKKDGILAKN 282
            +KDG++ ++
Sbjct: 74  AQKDGLVPRD 83


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 151 VXPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 267
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,677,464
Number of Sequences: 27780
Number of extensions: 127980
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)