Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B11
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    57   6e-09
At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    56   1e-08
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    27   4.1  
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    26   9.6  

>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 30/68 (44%), Positives = 41/68 (60%)
 Frame = +1

Query: 76  PRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIRRMGESDDCIVRLT 255
           PR CSA+NRLI +KDHASVQL I  +  A G        + +CG +R  G++D  + RL 
Sbjct: 14  PRKCSATNRLITSKDHASVQLNIGHL-DANGLYTGQFTTFALCGFVRAQGDADSGVDRLW 72

Query: 256 KKDGILAK 279
           +K  + AK
Sbjct: 73  QKKKVEAK 80


>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 29/68 (42%), Positives = 41/68 (60%)
 Frame = +1

Query: 76  PRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIRRMGESDDCIVRLT 255
           PR CSA+NR+I +KDHASVQL I  +  A G        + +CG +R  G++D  + RL 
Sbjct: 14  PRKCSATNRMITSKDHASVQLNIGHL-DANGLYTGQFTTFALCGFVRAQGDADSGVDRLW 72

Query: 256 KKDGILAK 279
           +K  + AK
Sbjct: 73  QKKKVEAK 80


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = -2

Query: 194 YILDVSAARPVAGXTSAITSCTEAWSLAWMRRLLAEHXLGQGQXNECTGGVXHLRWT 24
           +I D    R   G  + +    + W   ++++ L  H L         GG+ +L WT
Sbjct: 141 WIFDTDYIREKCGRRNNVMDLKQQWFYRFLKKTLVLHILAFWTLIYLWGGLPYLTWT 197


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 IADVXPATGRAADTSKMYVVCGAIRRMGESDDCIVR 249
           I  + PA GRA    +   V G   RMG S+D +V+
Sbjct: 208 IVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,195,766
Number of Sequences: 28952
Number of extensions: 117533
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)