Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B08
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)         31   0.56 
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.9  
SB_31379| Best HMM Match : Pou (HMM E-Value=0)                         27   9.1  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   27   9.1  

>SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)
          Length = 828

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 33/111 (29%), Positives = 42/111 (37%)
 Frame = -1

Query: 612 VSXYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYS 433
           V+   P    Q FN +    SV     +++GDFN H     S  S       LDILD Y 
Sbjct: 370 VNKLTPTQFFQDFNNLLEHFSVSSGRLLVMGDFNFH----VSEPSRDDAARFLDILDSYY 425

Query: 432 LCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPI 280
           L   +   PT   K       +DL I      S L+         SDHY +
Sbjct: 426 LA-QHVTEPTHKRK-----GTLDLVITRKNEVSVLNCKVETPDL-SDHYAV 469


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = -1

Query: 585 LQIFNEIKNLISVLPRP-FMILGDFNSHHTSW--GSSVSNSYGYE-LLDILDMYSLCILN 418
           +++F+E     S L R  ++ILGDFN     W  GS  SN+       + L   +L  +N
Sbjct: 188 MKMFSEFTRAASRLHRTKYLILGDFNLPKVEWLDGSGYSNTQQESAFTESLKDNALFQIN 247

Query: 417 SGSPTRLTKPGEVISAIDLSICT-PQLASSL 328
           + SPT  +        +DL I   P+L S +
Sbjct: 248 T-SPTHFSPLDNTGHILDLVITNEPELISEI 277


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 417  SGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS 271
            SGS  R  K    I      + TP L++S+  + +   YN DH P+ +S
Sbjct: 1946 SGSMDREKKANYSIRVTATDLGTPPLSASMEITVIVDDYN-DHRPVFLS 1993


>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 489 SSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLS 358
           S  ++S GY+  DILD  S  +  + S ++  KP E  S I+++
Sbjct: 93  SHSADSGGYDAHDILDQISASLQPTVSESQFDKPFETPSPINIA 136


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -1

Query: 522 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPG 385
           G +   H  +G    N  G  LLD      L I NS    RL  PG
Sbjct: 194 GGYEGVHGGYGYGERNPEGVRLLDFAVANELVITNSMFQKRLRDPG 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,012
Number of Sequences: 59808
Number of extensions: 300024
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)