Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B08
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37910.1 68418.m04567 seven in absentia (SINA) family protein...    28   5.6  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   7.4  

>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 276

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 272 HFPETHATVIWRNIKRFRSA 213
           H+  TH+T I+ NIKRFR A
Sbjct: 143 HYKLTHSTNIFWNIKRFRCA 162


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 558 LISVLPRPFMILGDFNSHHTSWGSSVSNSYGY 463
           L   LP    +LG   S+ T W SS S ++GY
Sbjct: 69  LACALPSHLSLLGSL-SYATHWSSSTSRAFGY 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,222
Number of Sequences: 28952
Number of extensions: 207889
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)