Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B07
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   9.2  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 139 TNKSKISY*NNTL*DTGTHNANAHNYLNMY 50
           + + KI   NN+L +   +N N +NY N Y
Sbjct: 76  SKEPKIISNNNSLSNNYNYNNNYNNYNNNY 105


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 306 INIVYIPYPINESTKIIGQCTSNENGTK*RLYNFESFV 419
           I++ Y P+         G  T N +     LYN ++FV
Sbjct: 153 IDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFV 190


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 376 SFDVHCPIIFVDSFIGY 326
           S++VH P+   D++IG+
Sbjct: 52  SWEVHDPVTNSDTYIGF 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,453
Number of Sequences: 438
Number of extensions: 4737
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)