Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B04
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.032
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.30 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +2

Query: 386 DGFEDNIETIDSAEDAKNSQQDNARKTEDKDSDETVFDVLEPDSKEEPKLPPPIVEDEKK 565
           DG +DN +  D+    ++++ D  +KT     D    D  E    +E  +PP +  DEK 
Sbjct: 109 DG-DDNNDYEDNDYGNQDNRNDRRKKTFAAREDN---DEEEAQKPKEQYIPPELPNDEKS 164

Query: 566 IFLEAQEI 589
           +F    EI
Sbjct: 165 LFENGVEI 172


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 338 DNRDPDQENKEEIDSDDGFEDNIETIDSAEDAKNSQQDNARKTEDKDSDE 487
           D+RD D+EN+EE D   G  +  + +   EDA  +     R+ +D+ S E
Sbjct: 278 DDRDDDEENEEEEDG-RGQSEAEKRLKLDEDADGAVSP-LRREKDRGSRE 325


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -2

Query: 512 QVLRHRKQFHQNLYLLFFLRYLVDYFWHLQQNQ---WFQ 405
           Q L   K+FH N YL    R  + +   L + Q   WFQ
Sbjct: 19  QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQ 57


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -2

Query: 512 QVLRHRKQFHQNLYLLFFLRYLVDYFWHLQQNQ---WFQ 405
           Q L   K+FH N YL    R  + +   L + Q   WFQ
Sbjct: 281 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQ 319


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 341 NRDPDQENKEEIDSDDGFEDN 403
           N+D ++ N+ EI+SD+  E N
Sbjct: 69  NQDTEKLNQLEIESDNSKEVN 89


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 425 QQNQWFQCYLQNHHRCQF 372
           ++N WF  + ++H +C++
Sbjct: 421 RRNPWFVEFWEHHFQCRY 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,488
Number of Sequences: 438
Number of extensions: 1884
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)