Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B03
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0625 - 26225201-26225879,26226706-26227553 33 0.13
10_01_0274 - 2901033-2901778,2902475-2902634 32 0.39
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 31 0.90
03_05_0456 - 24498212-24499581,24502660-24503071 30 1.6
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 2.1
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 2.7
05_07_0206 - 28405109-28406671 29 3.6
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 28 4.8
02_05_0989 - 33343233-33344417 28 4.8
08_02_1624 - 28334067-28335851 27 8.4
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Frame = +1
Query: 214 PDTERP--YAVNQYGLYNRNDIPPQSRPEPELGQN-----FAVYDPDTRQR----TSTAI 360
PDT RP VN + +PP+ RP P +G + F YDP R + T
Sbjct: 126 PDTHRPAIVVVNPATRWCSPPLPPR-RP-PRMGASTFPADFLAYDPAASSRYEVLSVTCF 183
Query: 361 NRNCTAPGCCVP 396
R C+A CC+P
Sbjct: 184 RRRCSACSCCLP 195
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 31.9 bits (69), Expect = 0.39
Identities = 28/97 (28%), Positives = 33/97 (34%)
Frame = +1
Query: 184 PPTNWPREVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYDPDTRQRTSTAIN 363
PP+ P P E P A YG + PP P PE GQ Y P T + A
Sbjct: 191 PPSTPPGYGQPAPECPPADPGYG-QPAPECPPPPTPAPECGQPAPEYPPSTPAYGTPAPE 249
Query: 364 RNCTAPGCCVPKCFAEKGNRGFPGSPGPQGPRGLPGH 474
+ P P GSP P P P +
Sbjct: 250 CPPSTPEYGTPATACPPPTAPGYGSPSPFWPPVSPAY 286
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 30.7 bits (66), Expect = 0.90
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +1
Query: 316 AVYDPDTRQRTSTAINRNCTAP---GCCVPKCFAEKGNRGFPGSPGPQGPRGLPGHEG 480
A + P RT T + + T G P C R FPG G P +PGH G
Sbjct: 24 AAFVPVAESRT-TPVEKTTTTQAEDGVKKPDCVPAFDPRSFPGHGGTTTPTPIPGHHG 80
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 289 VLIGVVYRFYYTTHIDLQRMVAPYLAPLHEAS*SAANXLEYMLFQSAYLS 140
+L+ V + Y THI M+ P+LA +H + + N ML +A ++
Sbjct: 365 LLVSAVGQARYLTHIARTHMMPPWLARVHPGTGTPVNATVAMLLATAVIA 414
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 184 PPTNWPREVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYD 327
PP + P P + P + Y Y+R P S EP +A YD
Sbjct: 152 PPYDRPNYPPPSPQEPVRNSYYMSYDRPSYPAASPQEPTRTSYYASYD 199
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 569 PVLPLSPLGPRGPCGPI--*PFCPLGPCAPSA 480
P+ +PLGP P GP+ P PLGP +A
Sbjct: 503 PIGSAAPLGPVAPIGPVSPGPVAPLGPDGSAA 534
>05_07_0206 - 28405109-28406671
Length = 520
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 283 SRPEPELGQNFAVYDPDTRQRTSTAINRNCT 375
+RP P +FA Y PD ++ S A NCT
Sbjct: 103 TRPRPVYLVDFACYKPDDERKCSRARFMNCT 133
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 31 GARARDSGAARLVPWWSTYC 90
GA A +G + L+PWWS C
Sbjct: 604 GAGAYGNGPSSLLPWWSASC 623
>02_05_0989 - 33343233-33344417
Length = 394
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 331 PDHTQRSFALILVPVLI-GVVYRFYYTTHIDLQRMVAPYLAP 209
P + S AL+L+P+L+ G +Y F Y +LQ ++ P
Sbjct: 78 PKLSASSKALVLLPLLLLGFIYLFVYPKEFELQALMMSSCGP 119
>08_02_1624 - 28334067-28335851
Length = 594
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 328 PDTRQRTSTAINRNCTAPGCCVPKCFAEKGNRGFPG 435
P T+Q R C C +C E+ NRG G
Sbjct: 370 PTTQQLLKRQTQRGCHCAELCGSRCSCERKNRGADG 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,446
Number of Sequences: 37544
Number of extensions: 359402
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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