Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B03
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,... 32 0.25
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 31 0.75
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 31 0.75
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 30 1.00
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 29 2.3
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual... 29 2.3
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 3.0
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 29 3.0
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 29 3.0
At4g21120.1 68417.m03054 amino acid permease family protein simi... 28 4.0
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 5.3
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 27 7.0
At1g32330.1 68414.m03983 heat shock transcription factor family ... 27 7.0
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 9.3
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 27 9.3
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 27 9.3
>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
putative / protein phosphatase 2A 62 kDa B'' regulatory
subunit, putative contains Pfam profile: PF00036 EF
hand; identical to cDNA protein phosphatase 2A 62 kDa
B'' regulatory subunit GI:5533378
Length = 538
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = +1
Query: 295 PELGQNFAVYDPDTRQRTSTAINRNCT----APGCCVPKCFAEKGN-----RGFPGSP 441
PE G+ DT+ T ++++NCT A G +P F G RG PGSP
Sbjct: 45 PETGRLVKSLIDDTKSSTPVSVSKNCTSLNVACGSALPSVFLNSGTPPLSPRGSPGSP 102
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 30.7 bits (66), Expect = 0.75
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
P P P P+ GP G GP P +GP P P
Sbjct: 329 PGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGPMGP 365
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 560 PLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
P+ P GP GP GP+ P+G P P
Sbjct: 326 PMGPGGPMGPGGPMGQGGPMGMMGPGGP 353
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
P P P+ P P+G GP G + P P+ P P
Sbjct: 326 PMGPGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGP 362
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 30.7 bits (66), Expect = 0.75
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
P P P P+ GP G GP P +GP P P
Sbjct: 428 PGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGPMGP 464
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 560 PLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
P+ P GP GP GP+ P+G P P
Sbjct: 425 PMGPGGPMGPGGPMGQGGPMGMMGPGGP 452
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
P P P+ P P+G GP G + P P+ P P
Sbjct: 425 PMGPGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGP 461
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 30.3 bits (65), Expect = 1.00
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 376 APGCCVPKCFAEK--GNRGFPGSPGPQGPRGLPGHEG 480
+PG +P F GN G PG PG G G+PG G
Sbjct: 94 SPGFRLPFPFPSSPGGNPGIPGIPGIPGLPGIPGSPG 130
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Frame = +1
Query: 319 VYDPDTRQRTSTAINRNCTAPGCCVPKCFAEK--GNRGFPGSPG-------PQGPRGLPG 471
V DP + ++S + +PG +P F GN G PGSPG P P G PG
Sbjct: 53 VSDPFSSLQSSPPTSPIPGSPGFRLPFPFPSSPGGNPGIPGSPGFRLPFPFPSSPGGNPG 112
Query: 472 HEG 480
G
Sbjct: 113 IPG 115
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAPS 474
P NP P++P +P P P P P P P P P+
Sbjct: 205 PGNPGAPIIPRNPGSPEFPINP--PRNPGAPVIPRNPN 240
>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
specificity kinase 1 (ADK1) [Arabidopsis thaliana]
gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
and gi:1216483. Note: differences between cDNAs in the
11th exon, possibly due to errors or alternative
splicing.
Length = 471
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 217 DTERPYAVNQYGLYNRNDIPPQSRP 291
D+ERP + ++YG +R IP SRP
Sbjct: 378 DSERPRSSSRYGSSSRRAIPSSSRP 402
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPL-GPCAPSAPS 474
P P P P+SP G P PI P P GP PS+PS
Sbjct: 561 PPTPSTPPTPISP-GQNSP--PIIPSPPFTGPSPPSSPS 596
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 409 EKGNRGFPGSPGPQGPRGLPGHEG 480
+ G +G PG G QG G+PG +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQG 170
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 415 GNRGFPGSPGPQGPRGLPGHEGAE 486
G +G G PG G +G+PG +G +
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 409 EKGNRGFPGSPGPQGPRGLPGHEG 480
+ G +G PG G QG G+PG +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQG 170
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 415 GNRGFPGSPGPQGPRGLPGHEGAE 486
G +G G PG G +G+PG +G +
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
>At4g21120.1 68417.m03054 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 594
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 289 VLIGVVYRFYYTTHIDLQRMVAPYLAPLHEAS*SAANXLEYMLFQSAYLS 140
+L+G + + Y THI M+ P+LA ++ + + N ML +A ++
Sbjct: 363 LLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIA 412
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 282 LGWYIVSIIQPILIYSVWSLRIWRHFTRPVSRRQXPWNICYSNPHIYHLASLL 124
LGW SIIQ + V S W+ + P +R + P ++H A L
Sbjct: 1052 LGWCAFSIIQIVGTIFVMSQVAWQRYYTPTARELSRMSGVERAPILHHFAESL 1104
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 282 LGWYIVSIIQPILIYSVWSLRIWRHFTRPVSRRQXPWNICYSNPHIYHLASLL 124
LGW SIIQ + V S W+ + P R + P ++H A L
Sbjct: 599 LGWCAFSIIQIVGTIFVMSQVAWQRYYTPTERELSRMSGVERAPILHHFAESL 651
>At1g32330.1 68414.m03983 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 485
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 259 NRNDIPPQSRPEPELGQNFAVYDPD 333
N ++ PP+S EP LG + + DPD
Sbjct: 376 NNSEKPPESFMEPNLGGSSPLLDPD 400
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 415 GNRGFPGSPGPQGP 456
G GFPG+PGPQ P
Sbjct: 449 GYGGFPGAPGPQFP 462
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 157 GITYIPGXLPPTNWPREVAP----DTERPYAVNQYGL--YNRNDIPPQSRPEPELGQNFA 318
G + +P L N+P AP P+A++ YG+ YN N +P Q+ P+P N
Sbjct: 431 GRSELPADLFAVNYPSYHAPVPGWQAGPPHAMH-YGMQQYN-NPVPYQNVPQPGKSMNPF 488
Query: 319 VYDPDTRQRTST 354
+ P +T T
Sbjct: 489 DFSPGPPSQTQT 500
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 157 GITYIPGXLPPTNWPREVAP----DTERPYAVNQYGL--YNRNDIPPQSRPEPELGQNFA 318
G + +P L N+P AP P+A++ YG+ YN N +P Q+ P+P N
Sbjct: 431 GRSELPADLFAVNYPSYHAPVPGWQAGPPHAMH-YGMQQYN-NPVPYQNVPQPGKSMNPF 488
Query: 319 VYDPDTRQRTST 354
+ P +T T
Sbjct: 489 DFSPGPPSQTQT 500
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,044
Number of Sequences: 28952
Number of extensions: 269420
Number of successful extensions: 791
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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