Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B01
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   3.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   6.2  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.2  

>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 416 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 324
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 563 TKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNLXK 709
           T    +++ +EI++   P  C VC     S      H  SK H KNL K
Sbjct: 253 TSSDDESLSKEIVNS-NPIMCMVCNKNFRSQNQLENHENSKKHKKNLRK 300


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 713 PIXSDSSHDFLKGNANETFQKSPIQEHKHH 624
           P   D+SHDF +    E   K+PI + K H
Sbjct: 291 PRWMDASHDFGREATPEILPKTPIPKRKPH 320


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 658 SKRVQFKSTNTTVLRLYFVQYFSRNVFQTVLCKST 554
           +KR +FKS+    LR +  +   R+V+QT L  +T
Sbjct: 486 AKRKEFKSSVLYSLRCFTKRSHLRSVYQTTLLSNT 520


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 203 SIMSIPFYKMNSREEYEMNED 265
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,915
Number of Sequences: 5004
Number of extensions: 62323
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)