Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B01
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    33   0.23 
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          30   2.2  
SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 488 GPDG-PAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSF 655
           GPDG PA+++ NR     R L RCG++ D +  + R ++ +   EY  V   +L  +
Sbjct: 118 GPDGIPALKKANRRLYAIRQLKRCGVSTDDIIVVYRSLV-RSTLEYASVVFADLPRY 173


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 426  DQDQDQCLGLYPIKTHSEEDLVRMALLCEDLTEWRELK 539
            + D+ +C  LYP + + E DL     L +D T+W  +K
Sbjct: 3232 NSDEGRC-ALYPARCNFETDLCNWQQLTDDDTDWTRMK 3268


>SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 467 NPFGRGFGPDGPAMRRPNRVE--RVKRYLMRCGLTKDSL 577
           NP  RG GPDG    R NR++  R++  L++ GL+  SL
Sbjct: 284 NPSIRGMGPDG----RSNRIKKLRMQEALLKLGLSLPSL 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,480,782
Number of Sequences: 59808
Number of extensions: 425780
Number of successful extensions: 1239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)