Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B01
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.8  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 YKMNSREEYEMNEDCGWTEEPPRLPRRK-IRNN-EYSNAFGNYNGGY 358
           Y+  S+E      +   ++EP  +     + NN  Y+N + NYN  Y
Sbjct: 59  YRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNY 105



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 314 NNEYSNAFGNYNGGY 358
           NN Y+N   NYN  Y
Sbjct: 95  NNNYNNYNNNYNTNY 109


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 314 NNEYSNAFGNYNGGYWSD 367
           NN Y+N + NYN   +++
Sbjct: 331 NNNYNNNYNNYNNNNYNN 348


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 622 VLRLYFVQYFSRNVFQTVLCKSTTH*ISFNSLHSVRSSHSRAIRTKSSS 476
           VL+L+ V ++   V++  LC  T        LH    S S  + +   S
Sbjct: 246 VLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDS 294


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 269 HNLHSFHILHGCS 231
           H LH  H LHG S
Sbjct: 135 HGLHGLHGLHGLS 147


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 417  SCLDQDQDQCLGLYPIKTHSEEDLVRMALLCE 512
            +C D D+++    Y   + ++ED V  +L  E
Sbjct: 1056 ACFDSDRERLYDCYVCYSPNDEDFVLHSLAVE 1087


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 698 SSHDFLKGNANETFQKSPIQEHKHHSTQAL 609
           SS     GN        P   H HH TQ+L
Sbjct: 332 SSPHHQHGNHTMGPTMGPPHHHHHHQTQSL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,594
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)