Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A23
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 30 1.0
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 30 1.0
U80448-1|AAB37815.1| 278|Caenorhabditis elegans Hypothetical pr... 27 9.5
U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical pr... 27 9.5
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 27 9.5
U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan sulphot... 27 9.5
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 27 9.5
AB037943-1|BAB61758.1| 696|Caenorhabditis elegans N-deacetylase... 27 9.5
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 27 9.5
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 27 9.5
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 442 TNPRAQRSKVRRYSITSAGPPFRKTGKSL 356
+ PRAQ+SK RR + S PP ++ SL
Sbjct: 811 STPRAQKSKSRRDDVESEAPPVKRATPSL 839
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 442 TNPRAQRSKVRRYSITSAGPPFRKTGKSL 356
+ PRAQ+SK RR + S PP ++ SL
Sbjct: 811 STPRAQKSKSRRDDVESEAPPVKRATPSL 839
>U80448-1|AAB37815.1| 278|Caenorhabditis elegans Hypothetical
protein F59A3.3 protein.
Length = 278
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 177 PIALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNTPYP-PVPENIRRKQELFQR 353
P+++ + +V ++ N Q + PG + T + Y P+P + E Q
Sbjct: 170 PLSVSKKQVMLVDPNDEQPCEARWQL-NGPGDEYIRVSTRSGYEIPIPSQAKVTYEYLQP 228
Query: 354 DNDLPVFLKGGPADVI 401
+N + V K PAD +
Sbjct: 229 ENYIEVEGKDTPADAV 244
>U53153-2|AAQ91899.1| 422|Caenorhabditis elegans Hypothetical
protein T19A5.3b protein.
Length = 422
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 243 TEEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQRDNDLPVFL 377
T AAP T P P P++++RKQ D D PV +
Sbjct: 344 TTTTTAAPTTTTPATTTMKPVPKKPKHVQRKQPNAAIDKDEPVVI 388
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 243 TEEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQRDNDLPVFL 377
T AAP T P P P++++RKQ D D PV +
Sbjct: 412 TTTTTAAPTTTTPATTTMKPVPKKPKHVQRKQPNAAIDKDEPVVI 456
>U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan
sulphotransferase protein 1 protein.
Length = 715
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 303 YPPVPENIRRK-QELFQRDN 359
YP +PEN+RRK ++F DN
Sbjct: 670 YPEMPENLRRKLDKIFSLDN 689
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 303 YPPVPENIRRK-QELFQRDN 359
YP +PEN+RRK ++F DN
Sbjct: 807 YPEMPENLRRKLDKIFSLDN 826
>AB037943-1|BAB61758.1| 696|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 696
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 303 YPPVPENIRRK-QELFQRDN 359
YP +PEN+RRK ++F DN
Sbjct: 651 YPEMPENLRRKLDKIFSLDN 670
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 303 YPPVPENIRRK-QELFQRDN 359
YP +PEN+RRK ++F DN
Sbjct: 769 YPEMPENLRRKLDKIFSLDN 788
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 303 YPPVPENIRRK-QELFQRDN 359
YP +PEN+RRK ++F DN
Sbjct: 781 YPEMPENLRRKLDKIFSLDN 800
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,825,255
Number of Sequences: 27780
Number of extensions: 288837
Number of successful extensions: 794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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