Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A23
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47530.1 68418.m05868 auxin-responsive protein, putative simi...    28   5.1  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    27   6.7  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    27   6.7  
At2g22690.1 68415.m02689 expressed protein                             27   6.7  
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    27   8.9  
At3g54630.1 68416.m06044 expressed protein weak similarity to re...    27   8.9  

>At5g47530.1 68418.m05868 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 (GI:11357190)
           [Arabidopsis thaliana]; similar to stromal cell derived
           factor receptor 2 (GI:20381292) [Mus musculus]
          Length = 395

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 569 FVFIIFIS----KCYHSKPSTNIIMLHINDLLFFGNSMGVDGLHYTYQSESAEKQ 417
           F+FII  S    KC + K STN +    NDL    +      LHYTY S S   Q
Sbjct: 14  FIFIITKSALAQKCSNYKFSTNRLFESCNDLPVLDSF-----LHYTYDSSSGNLQ 63


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 410 SDFASLRSRIGRCSANHLLPCYSQKTIDH*CEA 508
           SDFA++  R+   + N LL CY + T+   C A
Sbjct: 39  SDFANVLHRLRMRNYNILLACYEETTLGVLCSA 71


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 410 SDFASLRSRIGRCSANHLLPCYSQKTIDH*CEA 508
           SDFA++  R+   + N LL CY + T+   C A
Sbjct: 164 SDFANVLHRLRMRNYNILLACYEETTLGVLCSA 196


>At2g22690.1 68415.m02689 expressed protein
          Length = 381

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 135 LQLQIYRLHYSLXAPIALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLM 284
           L+L+++ LH+     IA  +     I Y    F+T + ++C  P  + LM
Sbjct: 180 LELKLHSLHF---LEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLM 226


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 219 NTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVP 317
           N   F  +T+E    P  R   P   TP PP P
Sbjct: 352 NRAAFQAITQEKSPVPPPRRSPPPLQTPPPPPP 384


>At3g54630.1 68416.m06044 expressed protein weak similarity to
           retinoblastoma-associated protein HEC [Homo sapiens]
           GI:2501873
          Length = 568

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 261 APGKRNLMPGTNTPYPPVPENIRRKQELF-QRDNDLPVFLKGGPADV 398
           A GKR    G     PP P +I +++ LF  RD+D   F    P+ +
Sbjct: 5   AAGKRRTTVGFGGAPPPPPPSIEQQRHLFNSRDSDAS-FASSRPSSI 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,438
Number of Sequences: 28952
Number of extensions: 264483
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)