Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A22
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 4e-20
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 69 5e-12
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) 31 1.2
SB_3985| Best HMM Match : C2 (HMM E-Value=0) 30 1.6
SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 3.7
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 3.7
SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17) 29 4.9
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 28 8.5
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18) 28 8.5
>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 95.5 bits (227), Expect = 4e-20
Identities = 40/124 (32%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Frame = +3
Query: 318 VFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYK-RNIAKVAA 494
+ + + +LK V + ++ +G+M S W++ +++ M W+ E K + AK+
Sbjct: 45 IVTFVLKYLKFVGVALGIWFMGWMGLSYVWVLCGLLVFTM---WKLNQEDKSKRRAKLQE 101
Query: 495 LSSEKDVILARLDDLPSWVFFPDVERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAVAES 674
+ I+A++DDLP+WVFFPDVERAEWLN++++Q+WP +N ++K+ +EP + ++
Sbjct: 102 VMKTDSEIVAKMDDLPAWVFFPDVERAEWLNKMIVQLWPFINDMVVKIMKETVEPEIQKN 161
Query: 675 LANY 686
+ +
Sbjct: 162 VPGF 165
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 68.5 bits (160), Expect = 5e-12
Identities = 39/119 (32%), Positives = 58/119 (48%)
Frame = +3
Query: 321 FSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYKRNIAKVAALS 500
FS +TFL + + G + S AWL+ + + KR I +V +
Sbjct: 16 FSHFFTFLGWFVLAWIAWAFGALHLSFAWLVLFLFIGAFLQSGHLLKSNKRKIHRV--IK 73
Query: 501 SEKDVILARLDDLPSWVFFPDVERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAVAESL 677
E DV ++PSW++F + E A WLNRIL Q+WP V + +LK +EPA+ L
Sbjct: 74 QENDVKKV-WPNMPSWIYFSEEEHALWLNRILDQMWPYVEDMVQGILKHSVEPAIQSYL 131
>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
Length = 454
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +1
Query: 34 TLKGRIIISLLNLQAIKIVS--TVLCITNYEKILSTEC 141
T G+I+ S+L++ + +V+ L ++N++K+LST+C
Sbjct: 343 TASGKIVGSILSVFGVLVVALPVFLFVSNFKKVLSTKC 380
>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
Length = 835
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 366 AVYLVGYMQWSVAWLIGPVILSV-MRDQWRKENEYKRNIAKVAALSSEKDVI 518
A++LVGYM +S AW++ +++ V + + K+ +++ N+ + A +SS D I
Sbjct: 117 ALWLVGYMHFSFAWIVMILMIFVSWQFEIEKKTKHRENMVQ-AHMSSYIDKI 167
>SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 565 TSGKNTHEGKSSSLASITSFSEDSAATFAMLRLYSFSLRH*SRITDNITGPIS 407
TS N EG ++SFSED + M R +F R+ +TG S
Sbjct: 93 TSRTNEEEGVEKMQLLVSSFSEDQLNRYEMYRRAAFPKAAIKRLMQGVTGGTS 145
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 549 PMKASRQVSLVSHLFQKTVQRPLRCCVCIRS 457
P + SR L H+ T Q+P +C +C+R+
Sbjct: 311 PRRFSRSDELTRHMRTHTGQKPFQCRICMRN 341
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 549 PMKASRQVSLVSHLFQKTVQRPLRCCVCIRS 457
P + SR L H+ T Q+P +C +C+R+
Sbjct: 549 PRRFSRSDELTRHMRTHTGQKPFQCRICMRN 579
>SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)
Length = 231
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 509 FFRRQCSDLCDVAFVFVLLAPLIAHHRQYNGPNKPRNAPLHIT 381
F+RR D CD AF+ + + + A + KP A I+
Sbjct: 160 FYRRFYQDFCDTAFIEIYIGVVTAQSMEKKHFKKPLKASFEIS 202
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 377 SRLYAMERCVAYWARYIVGDARSMAQGERIQTQHRKGRC 493
+R Y M RYIVG+ +S++Q RI K RC
Sbjct: 339 NRRYFMRESDINPERYIVGNNKSISQSPRILVPAAKPRC 377
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 288 RQFCLHLPCYYHWPCCTKLLRRCRCFRD 205
RQFC+H+P K L RC CFR+
Sbjct: 854 RQFCIHIP--------GKYLTRCECFRN 873
>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
Length = 659
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +3
Query: 405 WLIGPVILSVMRDQWRKENEYKRNIAK 485
W + P +L+ +++Q++KE + K+N+ +
Sbjct: 247 WDVDPSMLAKLKEQYKKERKSKKNVKR 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,830,727
Number of Sequences: 59808
Number of extensions: 479300
Number of successful extensions: 1477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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