Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A22
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 91 7e-19
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 30 1.4
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 30 1.4
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 30 1.4
AL021493-2|CAA16393.1| 382|Caenorhabditis elegans Hypothetical ... 29 3.2
U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine rece... 29 4.3
U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine rece... 29 4.3
AF047657-9|AAK18945.1| 329|Caenorhabditis elegans Seven tm rece... 28 5.7
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 28 7.5
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 7.5
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 7.5
AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine re... 28 7.5
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF022980-12|AAG24186.1| 515|Caenorhabditis elegans Hypothetical... 27 9.9
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 91.1 bits (216), Expect = 7e-19
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Frame = +3
Query: 372 YLVGYMQWSVAWLIGPVILSVMRDQ-WRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 548
+ +G +S W++ +I SV + WRK +R IA A E++VI+A+L DLP+W
Sbjct: 21 FFLGKWDYSFVWVLIIIIASVTKSYLWRKRE--RRLIALRATALREREVIMAQLQDLPAW 78
Query: 549 VFFPDVERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAV 665
V FPD ER EWLN+++ Q+WP V Y KT + D I P V
Sbjct: 79 VQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQV 117
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 345 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 449
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 345 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 449
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 345 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 449
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>AL021493-2|CAA16393.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2B.2 protein.
Length = 382
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 28 TKTLKGRIIISLLNLQAIKIVSTVLCITNYEKILSTECND*NWL 159
+K LK ++++ L + QA S VL ITN++ +L +D NW+
Sbjct: 20 SKNLKIQLVLLLEHFQA----SYVLIITNFQLLLEISGSDKNWI 59
>U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine
receptor, class t protein37 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 272 TCHVIITGHAALNYCGVAGVFVIKTYSEQIRKLF 171
TC VI+ GHA + A VF+ +EQIRK F
Sbjct: 270 TC-VILIGHALWQFVQGAPVFIYIGLNEQIRKRF 302
>U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein36 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 272 TCHVIITGHAALNYCGVAGVFVIKTYSEQIRKLF 171
TC VI+ GHA + A VF+ +EQIRK F
Sbjct: 270 TC-VILIGHALWQFVQGAPVFIYIGLNEQIRKRF 302
>AF047657-9|AAK18945.1| 329|Caenorhabditis elegans Seven tm
receptor protein 39 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 7 LGLWF*LTKTLKGRIIISLLNLQA-IKIVSTVLCITNYEKILSTECN 144
LG F L + K +I +LL + I + +L +T Y K L+T CN
Sbjct: 267 LGPLFDLKMSFKSGVICALLGIYPFIDSILFMLIVTEYRKHLATLCN 313
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 566 RTSRMVEQDTPTSLAECEQLRKDFIEGPDRTG 661
+ + + E TPT L+EC +L K+F D+ G
Sbjct: 680 KNASVTEATTPTQLSECIKLVKEFQSKCDKEG 711
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 438 RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 581
+ Q +K ++ KRN + A + ++ + PSW PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 438 RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 581
+ Q +K ++ KRN + A + ++ + PSW PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712
>AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine
receptor, class t protein6 protein.
Length = 355
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 312 NSVFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 449
N F + + F KKV LVGY WS+ + PV+ SV W
Sbjct: 138 NPNFPLEFVFRKKVFYFVLGALVGYSFWSLLF-TKPVLFSVEYSCW 182
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 269 RCKQNCLTTRQ**WQQCFFYDVHISQKGVDCRSCVLSRLYAMERCV 406
RC Q C + Q W C D + + V C C LY RC+
Sbjct: 420 RC-QACTSVEQGKWNHCEKCDKCVKPRYVHCAQCARCHLYG--RCI 462
>AF022980-12|AAG24186.1| 515|Caenorhabditis elegans Hypothetical
protein T03D3.1 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 465 YKRN-IAKVAALSSEKDVILARLDDLPSWVFFPDVERAEWLNRILLQVW-PNVNSYAKTL 638
Y RN I K+ A DV+ A ++L + FPDV R + W N N ++
Sbjct: 33 YLRNTIGKLLARGHNVDVVFAVYNELANLDLFPDVRRIYYNRHADPDYWKKNANHFSNMF 92
Query: 639 LK 644
K
Sbjct: 93 EK 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,309
Number of Sequences: 27780
Number of extensions: 343305
Number of successful extensions: 916
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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