Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A21
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)               27   6.3  

>SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -1

Query: 265 LTNVISCRGQRRVS----DGNSSSSRGVWRYHGGY*AGCINVV 149
           L  ++S +G+ RV     DG ++++R V+ Y+G +  GC +V+
Sbjct: 330 LQTILSVKGEFRVGPYKVDGYAAATRTVYEYYGCFYHGCPSVL 372


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 142 RVWEKLRSWFRRCLRVWSGQR 80
           R+W K  SW + C R W  ++
Sbjct: 393 RLWPKCASWLKTCSRRWPSEK 413


>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
          Length = 270

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 251 YYVR*KKKISRHLSK*FLCFSGLCIKSQPY 340
           Y V  K K  +  +K F+C SGLC++ Q Y
Sbjct: 202 YKVEMKPKGLKPPTKRFVCASGLCLQRQDY 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,354
Number of Sequences: 59808
Number of extensions: 136489
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)