Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A19
(727 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 244 2e-63
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 149 9e-35
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 145 9e-34
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 110 4e-23
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 108 2e-22
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 106 6e-22
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 104 3e-21
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 100 4e-20
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 100 4e-20
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 99 1e-19
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 98 2e-19
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 97 5e-19
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 96 9e-19
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 93 5e-18
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 92 1e-17
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 91 2e-17
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 88 2e-16
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 82 1e-14
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 82 1e-14
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 75 1e-12
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 64 3e-09
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 7e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 3e-06
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 53 6e-06
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 51 3e-05
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 49 1e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 47 5e-04
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 45 0.002
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 44 0.004
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 44 0.004
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 43 0.009
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 39 0.11
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 39 0.14
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 38 0.19
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 38 0.25
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 37 0.44
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 37 0.58
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 36 1.3
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 35 1.8
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 35 1.8
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 3.1
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 34 4.1
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 34 4.1
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 34 4.1
UniRef50_Q22SA9 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 33 5.4
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 33 5.4
UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=... 33 7.2
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 33 7.2
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 33 7.2
UniRef50_Q4D7D1 Cluster: Putative uncharacterized protein; n=2; ... 33 7.2
UniRef50_Q24CQ8 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 33 7.2
UniRef50_Q2QMF8 Cluster: Spc97/Spc98 family protein, expressed; ... 33 9.5
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 33 9.5
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 33 9.5
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 244 bits (597), Expect = 2e-63
Identities = 116/129 (89%), Positives = 125/129 (96%)
Frame = +1
Query: 88 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 267
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 268 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 447
P+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 448 ILIRQRHIR 474
+LIRQRHIR
Sbjct: 128 VLIRQRHIR 136
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +3
Query: 618 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRV 725
RKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRP RV
Sbjct: 138 RKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRV 173
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 149 bits (360), Expect = 9e-35
Identities = 70/127 (55%), Positives = 94/127 (74%)
Frame = +1
Query: 94 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 273
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 274 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 453
RL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 454 IRQRHIR 474
IR + I+
Sbjct: 129 IRGKMIK 135
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 145 bits (352), Expect = 9e-34
Identities = 74/127 (58%), Positives = 91/127 (71%)
Frame = +1
Query: 91 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 270
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 271 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 450
+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 451 LIRQRHI 471
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 110 bits (264), Expect = 4e-23
Identities = 61/133 (45%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 258
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 259 EKDPKRLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 432
+ +FE + L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARS 122
Query: 433 IHHARILIRQRHI 471
AR L+ HI
Sbjct: 123 PKQARQLVTHGHI 135
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 108 bits (259), Expect = 2e-22
Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 261
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 262 KDPKRL---FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 432
++ + + L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARS 122
Query: 433 IHHARILIRQRHI 471
AR I HI
Sbjct: 123 PKQARQFITHGHI 135
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 106 bits (254), Expect = 6e-22
Identities = 63/135 (46%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Frame = +1
Query: 94 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 273
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 274 RL-FEGNALLRRLVRIGVL------DEKQM--KLDYVLGLKIEDFLERRLQTQVFKAGLA 426
+ G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLA
Sbjct: 65 DIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLA 124
Query: 427 KSIHHARILIRQRHI 471
KS+HHAR+LI R I
Sbjct: 125 KSVHHARLLIGGRCI 139
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 104 bits (249), Expect = 3e-21
Identities = 60/131 (45%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 258
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 259 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 438
D + +++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 439 HARILIRQRHI 471
AR LI HI
Sbjct: 123 QARQLITHGHI 133
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 100 bits (239), Expect = 4e-20
Identities = 52/130 (40%), Positives = 80/130 (61%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 261
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 262 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 441
+ R L+++L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 442 ARILIRQRHI 471
AR LI HI
Sbjct: 122 ARQLIVHGHI 131
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 100 bits (239), Expect = 4e-20
Identities = 54/127 (42%), Positives = 77/127 (60%)
Frame = +1
Query: 91 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 270
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 271 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 450
+ E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 451 LIRQRHI 471
LI HI
Sbjct: 126 LIVHGHI 132
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 98.7 bits (235), Expect = 1e-19
Identities = 52/122 (42%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Frame = +1
Query: 112 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 285
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 286 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 465
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 466 HI 471
H+
Sbjct: 132 HV 133
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 97.9 bits (233), Expect = 2e-19
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 261
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 262 -----KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 426
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFA 122
Query: 427 KSIHHARILIRQRHI 471
SI AR I HI
Sbjct: 123 NSIKQARQFIVHGHI 137
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 96.7 bits (230), Expect = 5e-19
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-- 255
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 256 -----EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 420
E + + +L +L+R G++ + +D +L LK E+ LERRLQTQV + G
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
Query: 421 LAKSIHHARILIRQRHI 471
LA+++ AR I HI
Sbjct: 123 LARTVIQARQFITHGHI 139
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 95.9 bits (228), Expect = 9e-19
Identities = 52/136 (38%), Positives = 77/136 (56%)
Frame = +1
Query: 79 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 258
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 259 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 438
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 439 HARILIRQRHIR*DNS 486
AR + H+ D S
Sbjct: 117 QARQFVSHGHVTVDGS 132
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 93.5 bits (222), Expect = 5e-18
Identities = 46/131 (35%), Positives = 79/131 (60%)
Frame = +1
Query: 91 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 270
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 271 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 450
K + +L + ++ L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 451 LIRQRHIR*DN 483
LI +HI+ N
Sbjct: 130 LIMHKHIQVKN 140
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 91.9 bits (218), Expect = 1e-17
Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 7/102 (6%)
Frame = +1
Query: 190 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------L 348
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 349 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIR 141
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = +3
Query: 621 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRV 725
KQVV+I F V LDS KH DF GGG P V
Sbjct: 144 KQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSV 178
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 91.5 bits (217), Expect = 2e-17
Identities = 52/130 (40%), Positives = 74/130 (56%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 261
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 262 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 441
++ E L L R G+L ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 442 ARILIRQRHI 471
AR I HI
Sbjct: 122 ARQFIVHGHI 131
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 87.8 bits (208), Expect = 2e-16
Identities = 47/125 (37%), Positives = 73/125 (58%)
Frame = +1
Query: 97 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 276
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--R 66
Query: 277 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 456
+ LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 67 ADKEKELLDHLVRAGFI-SPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 457 RQRHI 471
HI
Sbjct: 126 VHGHI 130
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 82.2 bits (194), Expect = 1e-14
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Frame = +1
Query: 112 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 291
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 292 A-LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 468
L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I H
Sbjct: 70 ERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGH 128
Query: 469 I 471
I
Sbjct: 129 I 129
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 82.2 bits (194), Expect = 1e-14
Identities = 50/130 (38%), Positives = 73/130 (56%)
Frame = +1
Query: 82 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 261
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 262 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 441
+ +R + LLR L RIG++ K LD VL L++ D L RRLQT V K + +
Sbjct: 64 EVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 442 ARILIRQRHI 471
AR + HI
Sbjct: 121 ARQAVVHGHI 130
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 75.4 bits (177), Expect = 1e-12
Identities = 45/120 (37%), Positives = 68/120 (56%)
Frame = +1
Query: 97 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 276
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHDT- 67
Query: 277 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 456
+ ++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI
Sbjct: 68 ---SDKIIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 64.5 bits (150), Expect = 3e-09
Identities = 44/149 (29%), Positives = 75/149 (50%)
Frame = -2
Query: 543 EVQVVYMNKTDSGSSN*SATVISPNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQ 364
EV V+ ++D + + + N+ L DQ+S +++ L Q L LQ++ QE+ NLQ
Sbjct: 34 EVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQ 93
Query: 363 TKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXERVFDAPYFTL 184
++ II+ L F Q +N++Q++ + ITFEQ + ++ F+L
Sbjct: 94 SQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSL 153
Query: 183 VAETVLSDDLQLLVKTCLFKRTTRCHVRL 97
V +TV + LQ V+T F R+ V L
Sbjct: 154 VLQTVFTSQLQFGVQTSGFVRSLWSRVSL 182
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -3
Query: 713 TTSTEWRFQREVNVLARVQAHNK*WDVHNLLADN 612
+++TEWR EVNVL R Q+ ++ WDV +LL ++
Sbjct: 24 SSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNS 57
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 7e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 193 VWRVKYTLARIRKAARELLTLEEKDPKRLF 282
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 328 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 435
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 53.2 bits (122), Expect = 6e-06
Identities = 32/105 (30%), Positives = 50/105 (47%)
Frame = +1
Query: 160 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 339
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 340 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
KL + + F ERRL + + + S A + H+R
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVR 134
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 50.8 bits (116), Expect = 3e-05
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +3
Query: 621 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRV 725
+Q+VNIPSFIVRL+S KHI FSL SP GG RV
Sbjct: 29 RQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRV 63
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/109 (27%), Positives = 53/109 (48%)
Frame = +1
Query: 148 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVL 327
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 328 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
+ L+ + F RRL T + K +A+ + A + Q H+R
Sbjct: 90 PTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVR 137
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 91 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 249
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 46.8 bits (106), Expect = 5e-04
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +1
Query: 160 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 339
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 340 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
LD + L L RRL + K + + I ++Q H+R
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVR 136
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -1
Query: 724 TRXGRPPPNGDFREKSMCLPESRRTINDGMFTTCLRTIIIR 602
TR GRPPP+G+ KSMC S RT G FT CL T I R
Sbjct: 50 TRPGRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWR 90
Score = 39.9 bits (89), Expect = 0.063
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = -3
Query: 560 LNSTKLKFKWSI*TKQIQAAAIRAPLLSHRICLCRIKILA*WMDFARPALNTCVCRRRSK 381
L++ + F S+ TK++ I P RI RIK A D ARP+L T VC+RRSK
Sbjct: 61 LSAKSMCFWLSVRTKKLGTFTICLPT---RIWRWRIKTRAWCTDLARPSLKTSVCKRRSK 117
Query: 380 K 378
K
Sbjct: 118 K 118
Score = 34.7 bits (76), Expect = 2.4
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 201 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 97
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +3
Query: 639 PSFIVRLDSGKHIDFSLKSPFGGGRPXRV 725
PSF+VR+DS K D SL SP GGGRP RV
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRV 52
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 44.0 bits (99), Expect = 0.004
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 148 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 324
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R LL +L +G+
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRTEMSGLLLEKLYVLGL 87
Query: 325 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
+ K L+ + F RRL + + +++++ HA +I H+R
Sbjct: 88 IPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVR 136
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 44.0 bits (99), Expect = 0.004
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +1
Query: 145 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 324
++ +++ Y ++N+ + + IR+ A +L L DP R LL +L +GV
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 325 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
L K D + + RRL + + +A++I A I Q H+R
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVR 137
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 42.7 bits (96), Expect = 0.009
Identities = 27/110 (24%), Positives = 53/110 (48%)
Frame = +1
Query: 145 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 324
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 325 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
+D KQ ++ + F RR + K A+ + A L+ H+R
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVR 136
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 39.1 bits (87), Expect = 0.11
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 202 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 375
+KY L+R +R A ++ L+ KDP R + +L++L +G++ KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 376 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
F RRL + K +A+++ A ++ HIR
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIR 92
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 38.7 bits (86), Expect = 0.14
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +1
Query: 253 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 432
L+EK R F N ++ V K +G + LERRL +++AG S
Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147
Query: 433 IHHARILIRQRHIR*DN 483
I+ AR+L+ +H+ +N
Sbjct: 148 IYQARLLVNHKHVLVNN 164
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 38.3 bits (85), Expect = 0.19
Identities = 29/85 (34%), Positives = 40/85 (47%)
Frame = +1
Query: 217 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 396
AR +K + + L EK + G +L R+ EK V G + LERRL
Sbjct: 46 ARFKKVSDYAVQLREKQKVKSMYG--VLEAQFRLTF--EKAEAQKGVAGENLLILLERRL 101
Query: 397 QTQVFKAGLAKSIHHARILIRQRHI 471
VF+AG A S AR ++R +HI
Sbjct: 102 DNAVFRAGFASSRTQARQIVRHKHI 126
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 37.9 bits (84), Expect = 0.25
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +1
Query: 229 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 408
K E T + K F N + ++ +I +E KL V GL + ++LERRL+ V
Sbjct: 38 KKPTEYATQLREKQKAKFIYNVMEKQFRKI--YEEAARKLG-VTGLTLIEYLERRLENVV 94
Query: 409 FKAGLAKSIHHARILIRQRHI 471
++ G AK+ AR ++ HI
Sbjct: 95 YRLGFAKTRRQARQIVSHGHI 115
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 37.1 bits (82), Expect = 0.44
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +1
Query: 109 TPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 288
TPR ++ RL EL +G+ G +R ++ L R RK + L LEEK R G
Sbjct: 7 TPRFKRQR-RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG 64
Query: 289 --NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 456
RRL+ +K ++V L + LE+RL VF+ G A SI AR L+
Sbjct: 65 LREEQFRRLINKA---KKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLV 117
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 36.7 bits (81), Expect = 0.58
Identities = 27/76 (35%), Positives = 39/76 (51%)
Frame = +1
Query: 247 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 426
+ L+EK R G L R +R +L+ + K G + LERRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 427 KSIHHARILIRQRHIR 474
++ AR L+ RH+R
Sbjct: 107 PTVIAARQLVSHRHVR 122
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 35.5 bits (78), Expect = 1.3
Identities = 23/107 (21%), Positives = 48/107 (44%)
Frame = +1
Query: 154 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDE 333
+++G Y L N E + + +I++ L + +D R+ + R+ ++G+++
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIET 90
Query: 334 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
Q L + + +RRL + + I A L+RQ H+R
Sbjct: 91 PQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVR 135
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 35.1 bits (77), Expect = 1.8
Identities = 25/106 (23%), Positives = 46/106 (43%)
Frame = +1
Query: 157 IIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEK 336
I+ + + ++ E + + +RK + L L + D R+ + RL +GV+
Sbjct: 32 IMARFHIHDESEFEAYEKAVLNLRKLSFLLQKLPKDDAFRMVLTKRICDRLYDLGVIILP 91
Query: 337 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
+ L + + DF RRL V + + A LI+Q HI+
Sbjct: 92 EKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIK 137
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 35.1 bits (77), Expect = 1.8
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +1
Query: 226 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 405
RK ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 35 RKISQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVL-LQL---LEMRLDNT 90
Query: 406 VFKAGLAKSIHHARILIRQRHIR*DN 483
+F+ G+A +I AR L+ RHI +N
Sbjct: 91 IFRLGMASTIPGARQLVSHRHILINN 116
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 3.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 127 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 306
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 33.9 bits (74), Expect = 4.1
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Frame = +1
Query: 145 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 324
+E KI+ Y +++ E + + RI K EL L E D R+ + L+ +L +
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 325 ----LDEKQMKLDYVLG-------LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 471
L QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 472 R 474
R
Sbjct: 147 R 147
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 33.9 bits (74), Expect = 4.1
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 184 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 360
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 361 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 474
+ F RRL + G+ +S+ A L+ Q H+R
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVR 136
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 33.9 bits (74), Expect = 4.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 451 KFWHDGWTSPGQL*TPASAD 392
+FWH GW+SP Q TPA+A+
Sbjct: 103 QFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q22SA9 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1808
Score = 33.5 bits (73), Expect = 5.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 608 YQTNASYYENTNCFKTLNSTKLKFKWSI*TKQIQAAAIRAPLLSHRI 468
YQTN Y E NC+ T ++ ++W + K+I + +P + H I
Sbjct: 272 YQTNIWYLEFPNCWVTTDAKNQLYEWDL-EKEIVKRTLSSPKIKHTI 317
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 33.5 bits (73), Expect = 5.4
Identities = 28/85 (32%), Positives = 41/85 (48%)
Frame = +1
Query: 217 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 396
A +K + + LEEK RL G + R+++R K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSE-RQMLRYM---RKARRSKGSTGLALLQMLEMRL 94
Query: 397 QTQVFKAGLAKSIHHARILIRQRHI 471
VF+ G+A +I AR L+ HI
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHI 119
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 33.5 bits (73), Expect = 5.4
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 334 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR*DN 483
K K+ G + FLE RL VF+ +A +I AR LI HIR +N
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNN 141
>UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=1;
Burkholderia sp. 383|Rep: Putative monooxygenase,
FAD-binding - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 374
Score = 33.1 bits (72), Expect = 7.2
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 31 LSASSACELAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKII--GEYGLRNKREVWRV 204
LS S L ++ + R+P+VFS+ + R PF +A D G L
Sbjct: 252 LSNDSVASLRQLASERLPAVFSQLVLATRAPFVQAIFDALSPHFAHGRVALVGDAACTVR 311
Query: 205 KYTLARIRKAARELLTLEEKDP 270
+T + KAAR+ ++L E P
Sbjct: 312 PHTASGTSKAARDAVSLAESLP 333
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 33.1 bits (72), Expect = 7.2
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 220 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQ 399
R RK + + L+EK + G +L R R + + K + G + F+E RL
Sbjct: 41 RRRKQSEYGIQLQEKQKAKYTYG--ILERQFR-NIFHQASRKKG-ITGENLLKFIEARLD 96
Query: 400 TQVFKAGLAKSIHHARILIRQRHI 471
V++ G+A + AR L+ RHI
Sbjct: 97 NTVYRLGIAPTRSGARQLVSHRHI 120
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 33.1 bits (72), Expect = 7.2
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 226 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 405
RK + L L EK + G +L + R KQM + + G + LE RL
Sbjct: 21 RKMSEYGLQLREKQKAKFIYG--VLEKPFRNYYAKAKQM--EGMTGENLMRILESRLDNV 76
Query: 406 VFKAGLAKSIHHARILIRQRHI 471
+F+ GLA++ AR ++ +H+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHV 98
>UniRef50_Q4D7D1 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 561
Score = 33.1 bits (72), Expect = 7.2
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 364 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR*DNSGALIAAA*ICFVHIDHLNF 543
L ++ F L QV G+ A+ L R R NSG + AA I +VH +F
Sbjct: 322 LSVDTFSLGPLANQVVVCGMRNGTIQAQSLQDMRTHRSFNSGIQLKAACIPYVHCVENSF 381
Query: 544 NFVEFNVL 567
NFV +++
Sbjct: 382 NFVSVSII 389
>UniRef50_Q24CQ8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 168
Score = 33.1 bits (72), Expect = 7.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 638 DVHNLLADNYYQTNASYYENTNCFKTLNSTKLKFKWSI 525
D+ N + +Y+ N S+Y+N K +N T+LK K+++
Sbjct: 21 DIFNSIEQQFYELNKSFYKNIR--KQINKTQLKVKYNL 56
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 33.1 bits (72), Expect = 7.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 331 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 471
E+ + + G + + LE RL V +AG A++I AR L+ RHI
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHI 122
>UniRef50_Q2QMF8 Cluster: Spc97/Spc98 family protein, expressed;
n=6; Oryza sativa|Rep: Spc97/Spc98 family protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 1139
Score = 32.7 bits (71), Expect = 9.5
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 555 FNKVEV-QVVYMNKTDSGSSN*SATVISPNMPLPDQNSGMMDGLRQASFEHLRLQTTLQE 379
F KV+ V + D GS S + + P M LP QN+G+M+ ASF +LQ ++ +
Sbjct: 20 FLKVKAAHVKAKGRNDCGSWRKSGSRVDPPMVLPQQNAGLMEADGSASFIR-KLQLSVSD 78
Query: 378 VL 373
L
Sbjct: 79 GL 80
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 32.7 bits (71), Expect = 9.5
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +1
Query: 217 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 396
+R K ++ + LEEK R G + L + + K + +G + LE L
Sbjct: 157 SRSGKRSQYRIRLEEKQKLRFHYGLTERQLLNYVHIA----RKAKWAIGRVLLQLLEMHL 212
Query: 397 QTQVFKAGLAKSIHHARILIRQRHI 471
+F+ G+A +I AR L+ RHI
Sbjct: 213 DNILFRLGMASTILGARQLVNHRHI 237
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 32.7 bits (71), Expect = 9.5
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 220 RIRKAARELLTLEEKDPKRLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERR 393
+ RK + + L+EK + + G N+ L R R ++ K GL + LE R
Sbjct: 39 KTRKLSEFAVQLQEKQKLQYYYGITNSQLARYFR----QARRSKSS--TGLALLTMLETR 92
Query: 394 LQTQVFKAGLAKSIHHARILIRQRHIR*DNSGALIAA 504
L V++AG A ++ AR L+ H++ + IA+
Sbjct: 93 LDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIAS 129
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,620,630
Number of Sequences: 1657284
Number of extensions: 13952497
Number of successful extensions: 39213
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 37864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39185
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -