Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A17
         (779 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           38   5e-04
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       29   0.16 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         25   3.5  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         25   3.5  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 37.5 bits (83), Expect = 5e-04
 Identities = 33/135 (24%), Positives = 52/135 (38%)
 Frame = +1

Query: 355 DLTRHQKAVNVVRWSPNGQLLASGDDESIIFIWKQKLEELSPATEGEEQYKETWVVYKTL 534
           +L  H+  V +V+W+   Q LAS D   IIF+W               +Y+  W V + +
Sbjct: 59  NLRGHRSDVILVKWNEPYQKLASCDSSGIIFVW--------------IKYEGRWSV-ELI 103

Query: 535 RGHMEDVLDISWSMDGSQLASGSVDNKLIVWDIHRARYTTILSDHKGFVQGVCWDPKGQY 714
                 V   SWS DG        D  ++V  +   RY + + +    +    W P  Q 
Sbjct: 104 NDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQRYWSSMLNLDATITCGIWTPDDQQ 163

Query: 715 ITSTSTDRVFRAFDV 759
           +   +T       DV
Sbjct: 164 VYFGTTQGQIIVMDV 178


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 565 ICQGHLPCALEESYKQPKFLYIAPHPQLPE 476
           +C+  + C + E YK P F Y++  P   E
Sbjct: 357 VCRRTISCGIAEEYKVPYFDYVSSDPSFEE 386


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -2

Query: 592 PTVSHPYSR--ICQGHLPCALEESYKQPKFLYIAPHPQLPEKVLP 464
           P V  PY +  +   H P  L  +Y      Y  P P  P+ ++P
Sbjct: 168 PAVLLPYPQHVLHPAHHPALLHPAYHTGLHHYYQPSPSHPQPIVP 212


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -2

Query: 592 PTVSHPYSR--ICQGHLPCALEESYKQPKFLYIAPHPQLPEKVLP 464
           P V  PY +  +   H P  L  +Y      Y  P P  P+ ++P
Sbjct: 168 PAVLLPYPQHVLHPAHHPALLHPAYHTGLHHYYQPSPSHPQPIVP 212


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,368
Number of Sequences: 2352
Number of extensions: 17793
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)