Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A16
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    39   0.003
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    29   3.8  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    27   8.9  

>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%)
 Frame = +2

Query: 206 KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVREL 385
           K++ P + L G VI V+   I VS+P  + G V +  + +     + +    K  +    
Sbjct: 135 KNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHD-----ITSQETRKDSEGSIC 189

Query: 386 SQMFKPGQYIAVSVVELAPGN--------TMLTTMPQHVNSGKRHTDIXKGAIFQAXVSS 541
           + +   GQ +   V+ +   N          L+     +  G     I  G +  A V S
Sbjct: 190 ADVVHVGQLVPCIVLRVDDDNKEGKVNKRVWLSLRLSRIYKGLSLDAIQDGMVLTAQVKS 249

Query: 542 XEXHGYVMDLGIPNTTAFLPXKD 610
            E HGY++  G+ + + F+P  D
Sbjct: 250 IEDHGYILHFGVSSFSGFMPKAD 272


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 134 YLSDEAQDYLKTHKLNNNLIFLSSKSLRPG 223
           Y+ D A ++LKTH L    + +  K+L PG
Sbjct: 316 YILDSAGEFLKTHGLQAGDVIIIYKNLAPG 345


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 221  GINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVE-DKTEKVRELSQMF 397
            G  ++ + + V ++  K+ +  +L GN+M C   ++ N +++  +E   TE +  +   F
Sbjct: 1556 GCRVIQKALEVMELDQKIELVRELDGNIMRCVRDQNGNHVIQKCIECVPTEHIGFVVSAF 1615

Query: 398  KPGQYIAVSV 427
            + GQ  ++S+
Sbjct: 1616 R-GQVASLSM 1624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,328
Number of Sequences: 37544
Number of extensions: 278905
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)