Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A16
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 514 TFXNIGMSFPTVYVLRHSRQHGVARCQFHYTHSYV 410
           TF NI     TVYVLR  +  GV R      +SY+
Sbjct: 262 TFENILSHINTVYVLRTKK--GVMRVDASEEYSYL 294


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 514 TFXNIGMSFPTVYVLRHSRQHGVARCQFHYTHSYV 410
           TF NI     TVYVLR  +  GV R      +SY+
Sbjct: 262 TFENILSHINTVYVLRTKK--GVMRVDASEEYSYL 294


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 307
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 307
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 191 IFLSSKSLRPGINLLGRVIHVSD 259
           IFLS+KSLR   NL    + +SD
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISD 64


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 191 IFLSSKSLRPGINL 232
           IFLS+KSLR   NL
Sbjct: 76  IFLSTKSLRTPSNL 89


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 211 LKAWNKFTWQGDSCIRCQNKSIDALQTIGQ 300
           +K     +W+GDS    +++ +    T GQ
Sbjct: 699 IKRSGSHSWEGDSFKVSKHEEVSRTSTAGQ 728


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 446 NTMLTTMPQHVN 481
           NT+LTTMP  +N
Sbjct: 94  NTILTTMPLLIN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,570
Number of Sequences: 438
Number of extensions: 2951
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)