Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A16
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    36   0.021
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    30   1.4  
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ...    29   3.2  
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    28   4.2  
At4g32940.1 68417.m04687 vacuolar processing enzyme gamma / gamm...    28   5.6  
At5g04895.1 68418.m00514 helicase domain-containing protein simi...    27   7.4  
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    27   9.8  
At1g10980.1 68414.m01260 expressed protein  ; expression support...    27   9.8  

>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
           similar to SP|Q05022 rRNA biogenesis protein RRP5
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00575: S1 RNA binding domain
          Length = 1838

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +2

Query: 197 LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY 352
           +++K++ PG+ LLG V  V+   I +S+P  L G V A  +S+  ++ +E +
Sbjct: 120 ITTKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSDFTDRGIEVF 171



 Score = 32.7 bits (71), Expect = 0.20
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 518 IFQAXVSSXEXHGYVMDLGIPNTTAFLPXKD 610
           +F A V S E HG ++  G+P+ T F+   D
Sbjct: 170 VFSANVKSIEDHGSILHFGLPSITGFIEISD 200


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 227 NLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 328
           N  GRV H   VK+++  PC        C + ES
Sbjct: 386 NYKGRVDHKKIVKVRIQKPCMYFNRPKGCRMGES 419


>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 474

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 GNVMACHISESYNKLLEAYVEDKTEKVRELSQM 394
           G VM C  +E+ NK +E YV   T   RE+ +M
Sbjct: 137 GWVMNCKDTEAKNKKIERYVSVTTALYREMEEM 169


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 221 GINLLGRVIHVSDVKIKVSMPCKL 292
           G  L GRV+H +++ IK+ MP KL
Sbjct: 2   GSRLGGRVVHFANLPIKLLMPAKL 25


>At4g32940.1 68417.m04687 vacuolar processing enzyme gamma /
           gamma-VPE nearly identical to SP|Q39119 Vacuolar
           processing enzyme, gamma-isozyme precursor (EC 3.4.22.-)
           (Gamma-VPE) {Arabidopsis thaliana}
          Length = 494

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 122 GDDGYLSDEAQDYLKTHKLNNNLIFLSSKSLRP 220
           GD G   D    Y+ T+  N+N  F  + SL+P
Sbjct: 315 GDVGISKDNLDLYMGTNPANDNFTFADANSLKP 347


>At5g04895.1 68418.m00514 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579;contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain, PF00035: Double-stranded RNA binding
           motif
          Length = 581

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 314 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGN 448
           +++ESY KL E   +   +K      + K G+Y+ ++V EL  G+
Sbjct: 404 NLAESYVKLKEELDKLLQKKANPSMDIHKEGKYLMLAVQELVAGD 448


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 218 PGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKT 367
           PGIN      H+S   +++    K + N  A  + E+Y K +E Y + KT
Sbjct: 395 PGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYNKTKT 444


>At1g10980.1 68414.m01260 expressed protein  ; expression supported
           by MPSS
          Length = 516

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 273 YRCLANYWAMSWHVTSASLIISYSKLML 356
           Y  L+ +W + W V +   I+SY+ L+L
Sbjct: 422 YSSLSQFWKVKWIVPTLWYILSYAMLVL 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,302
Number of Sequences: 28952
Number of extensions: 223649
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)