Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A11
(366 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q2F6A5 Cluster: Elongation protein 4-like protein; n=1;... 105 2e-22
UniRef50_UPI0000519EA2 Cluster: PREDICTED: similar to elongation... 50 1e-05
UniRef50_A7S8W5 Cluster: Predicted protein; n=1; Nematostella ve... 41 0.008
UniRef50_Q54XS0 Cluster: RNA polymerase II elongator complex sub... 38 0.043
UniRef50_Q17D33 Cluster: Pax neighbour protein; n=2; Culicidae|R... 38 0.043
UniRef50_Q9VMQ7 Cluster: Putative elongator complex protein 4; n... 38 0.057
UniRef50_Q4W0V9 Cluster: Elongator component; n=5; Magnoliophyta... 38 0.075
UniRef50_Q1EPK3 Cluster: Paxneb-related protein; n=1; Musa acumi... 37 0.13
UniRef50_A2YFG1 Cluster: Putative uncharacterized protein; n=3; ... 37 0.13
UniRef50_Q8W4Q0 Cluster: AT3g11220/F11B9_116; n=1; Arabidopsis t... 36 0.17
UniRef50_Q5DBL9 Cluster: SJCHGC00647 protein; n=3; Schistosoma j... 36 0.23
UniRef50_A2IDB3 Cluster: Elongation protein 4 homolog; n=11; Eut... 36 0.23
UniRef50_Q96EB1 Cluster: Elongator complex protein 4; n=28; Eute... 36 0.23
UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4; Deinococc... 36 0.30
UniRef50_O27166 Cluster: Conserved protein; n=1; Methanothermoba... 36 0.30
UniRef50_Q8D8I8 Cluster: RecA/RadA recombinase; n=4; Vibrio|Rep:... 35 0.40
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh... 35 0.40
UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 35 0.40
UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1; ... 35 0.53
UniRef50_UPI0000D555B9 Cluster: PREDICTED: similar to elongation... 34 0.70
UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 - B... 34 0.70
UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in s... 34 0.92
UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79; Proteoba... 33 1.2
UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;... 33 1.2
UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage Ma-LM... 33 1.6
UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9; Clostridi... 33 2.1
UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7; Proteobac... 33 2.1
UniRef50_A0NLA6 Cluster: DNA repair protein RadA; n=3; Bacteria|... 33 2.1
UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1; ... 32 2.8
UniRef50_UPI000065D4F5 Cluster: Homolog of Danio rerio "Novel he... 32 3.7
UniRef50_Q3W477 Cluster: Binding-protein-dependent transport sys... 32 3.7
UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein k... 32 3.7
UniRef50_Q2HCX7 Cluster: Putative uncharacterized protein; n=1; ... 32 3.7
UniRef50_Q6KYY8 Cluster: NADH dehydrogenase; n=2; Thermoplasmata... 32 3.7
UniRef50_Q6W4X8 Cluster: Putative primase/helicase; n=2; Strepto... 31 4.9
UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1; Syntropho... 31 4.9
UniRef50_A2DHG2 Cluster: DNA repair protein RAD51 homolog, putat... 31 4.9
UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia stipitis... 31 4.9
UniRef50_Q9W213 Cluster: CG13521-PB, isoform B; n=5; Sophophora|... 31 6.5
UniRef50_Q54IX8 Cluster: Putative uncharacterized protein; n=1; ... 31 6.5
UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5; Gammaprot... 31 8.6
UniRef50_P74848 Cluster: Amino acid permease YeeF like protein; ... 31 8.6
UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3; Cyanobact... 31 8.6
>UniRef50_Q2F6A5 Cluster: Elongation protein 4-like protein; n=1;
Bombyx mori|Rep: Elongation protein 4-like protein -
Bombyx mori (Silk moth)
Length = 369
Score = 105 bits (252), Expect = 2e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 61 MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV
Sbjct: 1 MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 49
>UniRef50_UPI0000519EA2 Cluster: PREDICTED: similar to elongation
protein 4 homolog; n=2; Apocrita|Rep: PREDICTED: similar
to elongation protein 4 homolog - Apis mellifera
Length = 364
Score = 50.4 bits (115), Expect = 1e-05
Identities = 23/38 (60%), Positives = 32/38 (84%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
I+GTK +KN+ VSSGIPSLD+I+GGG+P GS+F++
Sbjct: 14 ISGTKPSLKNSQLLVSSGIPSLDYIIGGGLPIGSLFLI 51
>UniRef50_A7S8W5 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 275
Score = 40.7 bits (91), Expect = 0.008
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
I GT+ + NN VS+GIPSLD ++GGGI G++ +V
Sbjct: 17 IPGTRPSIHNNQLLVSTGIPSLDSVIGGGIAVGTVLLV 54
>UniRef50_Q54XS0 Cluster: RNA polymerase II elongator complex
subunit; n=1; Dictyostelium discoideum AX4|Rep: RNA
polymerase II elongator complex subunit - Dictyostelium
discoideum AX4
Length = 439
Score = 38.3 bits (85), Expect = 0.043
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 103 NGTKV--KNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
NG K+ KN+ S+G+ LD I+GGGIP GSI ++
Sbjct: 48 NGCKISIKNSNLLTSTGLTDLDDIIGGGIPIGSILMI 84
>UniRef50_Q17D33 Cluster: Pax neighbour protein; n=2; Culicidae|Rep:
Pax neighbour protein - Aedes aegypti (Yellowfever
mosquito)
Length = 370
Score = 38.3 bits (85), Expect = 0.043
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 INGTKVK--NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
I GT+ + +SSG PSLDH+ GGG P GSI +
Sbjct: 13 IKGTRASLHSGQAILSSGNPSLDHVFGGGFPIGSIIAI 50
>UniRef50_Q9VMQ7 Cluster: Putative elongator complex protein 4; n=2;
Sophophora|Rep: Putative elongator complex protein 4 -
Drosophila melanogaster (Fruit fly)
Length = 437
Score = 37.9 bits (84), Expect = 0.057
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 61 MRSFRKFIDISTHINGTKVKNNLPYV--SSGIPSLDHIVGGGIPAGSIFVV 207
M SFRK + I GT+ + V SSG P LD ++GGG+P GSI ++
Sbjct: 1 MTSFRKRT-VQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI 50
>UniRef50_Q4W0V9 Cluster: Elongator component; n=5;
Magnoliophyta|Rep: Elongator component - Arabidopsis
thaliana (Mouse-ear cress)
Length = 355
Score = 37.5 bits (83), Expect = 0.075
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 67 SFRKFIDI--STHINGTKV-KNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
SF + I + S I G K N ++SSGI LD I+GGG P GS+ +V
Sbjct: 11 SFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60
>UniRef50_Q1EPK3 Cluster: Paxneb-related protein; n=1; Musa
acuminata|Rep: Paxneb-related protein - Musa acuminata
(Banana)
Length = 291
Score = 36.7 bits (81), Expect = 0.13
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
N +VSSGIP LD I+GGG GS+ +V
Sbjct: 44 NGATFVSSGIPDLDRILGGGFLLGSLVMV 72
>UniRef50_A2YFG1 Cluster: Putative uncharacterized protein; n=3;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 462
Score = 36.7 bits (81), Expect = 0.13
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
N +VSSGIP LD I+GGG GS+ ++
Sbjct: 37 NGAAFVSSGIPDLDRILGGGFLIGSVVMI 65
>UniRef50_Q8W4Q0 Cluster: AT3g11220/F11B9_116; n=1; Arabidopsis
thaliana|Rep: AT3g11220/F11B9_116 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 243
Score = 36.3 bits (80), Expect = 0.17
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
N ++SSGI LD I+GGG P GS+ +V
Sbjct: 32 NGTAFISSGIRDLDRILGGGYPLGSLVMV 60
>UniRef50_Q5DBL9 Cluster: SJCHGC00647 protein; n=3; Schistosoma
japonicum|Rep: SJCHGC00647 protein - Schistosoma
japonicum (Blood fluke)
Length = 340
Score = 35.9 bits (79), Expect = 0.23
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 INGTKVKNNLP--YVSSGIPSLDHIVGGGIPAGSIFVV 207
+NG K L +S+GIPS D ++GGG+ +GSI +V
Sbjct: 1 MNGVKRSFKLSTFLISTGIPSFDELLGGGVASGSIILV 38
>UniRef50_A2IDB3 Cluster: Elongation protein 4 homolog; n=11;
Eutheria|Rep: Elongation protein 4 homolog - Homo
sapiens (Human)
Length = 531
Score = 35.9 bits (79), Expect = 0.23
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLI 86
>UniRef50_Q96EB1 Cluster: Elongator complex protein 4; n=28;
Euteleostomi|Rep: Elongator complex protein 4 - Homo
sapiens (Human)
Length = 424
Score = 35.9 bits (79), Expect = 0.23
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLI 86
>UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4;
Deinococci|Rep: DNA repair protein radA - Deinococcus
radiodurans
Length = 503
Score = 35.5 bits (78), Expect = 0.30
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 130 PYVSSGIPSLDHIVGGGIPAGSIFVVG 210
P SGIP LD ++GGG+ AG + ++G
Sbjct: 130 PRTPSGIPELDRVLGGGLVAGGVTLIG 156
>UniRef50_O27166 Cluster: Conserved protein; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
Conserved protein - Methanobacterium thermoautotrophicum
Length = 470
Score = 35.5 bits (78), Expect = 0.30
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 136 VSSGIPSLDHIVGGGIPAGSIFVVGS*ISFKIA*YLRAKTNLINKYGYE 282
VS+GIP+LD ++GGG+ GS +V KT+L++K+ YE
Sbjct: 246 VSTGIPTLDEMLGGGVYRGSAVLVSGTTG-------AGKTSLLSKFAYE 287
>UniRef50_Q8D8I8 Cluster: RecA/RadA recombinase; n=4; Vibrio|Rep:
RecA/RadA recombinase - Vibrio vulnificus
Length = 227
Score = 35.1 bits (77), Expect = 0.40
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 97 HINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVGS*ISF----KIA*YLRAKTNLI 264
H N T+ N Y +SGI LD ++GGG P + + S + +A YL+ + +LI
Sbjct: 16 HANSTRCANESCYQTSGIDELDKLLGGGFPQHGVVEMESALGIGELRLLANYLKQQQDLI 75
>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 494
Score = 35.1 bits (77), Expect = 0.40
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 127 LPYVSSGIPSLDHIVGGGIPAGSIFVV 207
L VS+G+ LD ++GGGIPA SI VV
Sbjct: 10 LERVSTGVEGLDQVLGGGIPAKSITVV 36
>UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 237
Score = 35.1 bits (77), Expect = 0.40
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 124 NLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
NL + SG+P LD ++GGG G ++VV
Sbjct: 9 NLDRIPSGVPGLDELIGGGFLPGRVYVV 36
>UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1;
Herminiimonas arsenicoxydans|Rep: Putative
uncharacterized protein - Herminiimonas arsenicoxydans
Length = 480
Score = 34.7 bits (76), Expect = 0.53
Identities = 14/26 (53%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 VSSGIPSLDHIVGGGIPAG-SIFVVG 210
+S G+P+LD ++GGG+PAG S+ +VG
Sbjct: 251 LSMGVPALDEMMGGGLPAGYSLLLVG 276
>UniRef50_UPI0000D555B9 Cluster: PREDICTED: similar to elongation
protein 4 homolog; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to elongation protein 4 homolog -
Tribolium castaneum
Length = 1455
Score = 34.3 bits (75), Expect = 0.70
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 139 SSGIPSLDHIVGGGIPAGSIFVV 207
SSGI SLD I+GGG+P G++ ++
Sbjct: 34 SSGIHSLDSILGGGLPVGTVSII 56
>UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 -
Burkholderia phytofirmans PsJN
Length = 531
Score = 34.3 bits (75), Expect = 0.70
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 73 RKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
R D ST N ++ V +G+P LD I+GGG+ G ++++
Sbjct: 33 RTLNDSSTMTNHESQTSSRSNVETGVPGLDEILGGGLVRGGVYLL 77
>UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Methanocorpusculum labreanum Z|Rep: RecA-superfamily
ATPase implicated in signal transduction-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 238
Score = 33.9 bits (74), Expect = 0.92
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 136 VSSGIPSLDHIVGGGIPAGSIFVV 207
+ SGIP LD ++GGG GS+FV+
Sbjct: 11 IPSGIPGLDDMIGGGFIKGSVFVL 34
>UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79;
Proteobacteria|Rep: DNA repair protein radA -
Bradyrhizobium sp. (strain ORS278)
Length = 499
Score = 33.5 bits (73), Expect = 1.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 130 PYVSSGIPSLDHIVGGGIPAGSIFVVG 210
P +SSG+ LD + GGG GSI +VG
Sbjct: 70 PRLSSGMTELDRVTGGGFVRGSILLVG 96
>UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD57 - Candida albicans (Yeast)
Length = 511
Score = 33.5 bits (73), Expect = 1.2
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 133 YVSSGIPSLDHIVGGGIPAGSI 198
++S+G+PS+D +GGGIP G +
Sbjct: 84 FISTGLPSIDRELGGGIPIGEV 105
>UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage
Ma-LMM01|Rep: RecA recombinase - Cyanophage Ma-LMM01
Length = 354
Score = 33.1 bits (72), Expect = 1.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 133 YVSSGIPSLDHIVGGGIPAGSIFVVGS*ISFKIA*YLRAKTNLINKYGY 279
++ SGI SLD+++GGG P G I + S ++ +L+ GY
Sbjct: 42 FIPSGIFSLDYVLGGGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAKGY 90
>UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9;
Clostridiaceae|Rep: DNA repair protein radA -
Clostridium tetani
Length = 465
Score = 32.7 bits (71), Expect = 2.1
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 136 VSSGIPSLDHIVGGGIPAGSIFVV-GS*ISFKIA*YLRAKTNLINKYG 276
+S+GI L+ ++GGGI GS+ ++ G K L+A N+ KYG
Sbjct: 80 ISTGINELNRVLGGGIVRGSLTLISGDPGIGKSTLLLQAANNIAEKYG 127
>UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7;
Proteobacteria|Rep: DNA repair protein radA -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 459
Score = 32.7 bits (71), Expect = 2.1
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 109 TKVKN-NLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
++V+N +LP SSGI D ++GGGI GS+ ++
Sbjct: 65 SEVENKDLPRFSSGIGEFDRVLGGGIVPGSVLLL 98
>UniRef50_A0NLA6 Cluster: DNA repair protein RadA; n=3;
Bacteria|Rep: DNA repair protein RadA - Oenococcus oeni
ATCC BAA-1163
Length = 470
Score = 32.7 bits (71), Expect = 2.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVG 210
N LP +G+ L+ ++GGGI GS+ ++G
Sbjct: 68 NELPRTRTGLRELNRVLGGGIVPGSLILIG 97
>UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 711
Score = 32.3 bits (70), Expect = 2.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 133 YVSSGIPSLDHIVGGGIPAGSI 198
++S+G+P LD +GGGIP G +
Sbjct: 200 HISTGLPDLDEQLGGGIPIGEV 221
>UniRef50_UPI000065D4F5 Cluster: Homolog of Danio rerio "Novel
hemicentin protein; n=1; Takifugu rubripes|Rep: Homolog
of Danio rerio "Novel hemicentin protein - Takifugu
rubripes
Length = 2555
Score = 31.9 bits (69), Expect = 3.7
Identities = 15/20 (75%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 185 GIPPPTI-WSKDGIPEDTYG 129
GIP PTI WSKDG P DT G
Sbjct: 552 GIPSPTITWSKDGHPVDTPG 571
>UniRef50_Q3W477 Cluster: Binding-protein-dependent transport
systems inner membrane component; n=1; Frankia sp.
EAN1pec|Rep: Binding-protein-dependent transport systems
inner membrane component - Frankia sp. EAN1pec
Length = 298
Score = 31.9 bits (69), Expect = 3.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -2
Query: 236 YAILKEIHEPTTKMLPAGIPPPT-IWS---KDGIPEDTYGRLFFTFVPFICVLISI 81
Y + E + L G+PPP+ W DG P G F FVP +CV +++
Sbjct: 222 YMAFAVVAEASLSFLGLGVPPPSPSWGGMINDGRPY-LQGEPFLVFVPAVCVFLTV 276
>UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein
kinase; n=6; Proteobacteria|Rep: Non-specific
serine/threonine protein kinase - Pseudomonas putida F1
Length = 481
Score = 31.9 bits (69), Expect = 3.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 127 LPYVSSGIPSLDHIVGGGIPAGSI 198
L +SSG+P+ D ++GGG+ GS+
Sbjct: 240 LARISSGVPTFDEMLGGGLATGSV 263
>UniRef50_Q2HCX7 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 464
Score = 31.9 bits (69), Expect = 3.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 227 LKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRL 123
+ +I EP+T+ P+G PP +++ P+ YG L
Sbjct: 106 INDIWEPSTRPSPSGPPPRDSYTRQSSPDPNYGTL 140
>UniRef50_Q6KYY8 Cluster: NADH dehydrogenase; n=2;
Thermoplasmatales|Rep: NADH dehydrogenase - Picrophilus
torridus
Length = 432
Score = 31.9 bits (69), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 215 HEPTTKMLPAGIPPPTIWSKDGIPEDTYGRL 123
HE + GI P T + KDGI +D YGR+
Sbjct: 217 HESDLVIFATGIEPNTSFIKDGIKKDGYGRI 247
>UniRef50_Q6W4X8 Cluster: Putative primase/helicase; n=2;
Streptococcus thermophilus|Rep: Putative
primase/helicase - Streptococcus thermophilus
Length = 692
Score = 31.5 bits (68), Expect = 4.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 88 ISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVGS 213
I +NG N P +S+G P LD + GG G +++VG+
Sbjct: 355 IQDFLNGIADSANTPNISTGFPILDKCLDGGFYEG-LYIVGA 395
>UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA repair protein RadA - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 451
Score = 31.5 bits (68), Expect = 4.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 130 PYVSSGIPSLDHIVGGGIPAGSIFVVG 210
P SSG+ D ++GGGI GS+ ++G
Sbjct: 64 PRFSSGLSEFDRVLGGGIVPGSLILLG 90
>UniRef50_A2DHG2 Cluster: DNA repair protein RAD51 homolog,
putative; n=1; Trichomonas vaginalis G3|Rep: DNA repair
protein RAD51 homolog, putative - Trichomonas vaginalis
G3
Length = 115
Score = 31.5 bits (68), Expect = 4.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 112 KVKNNLPYVSSGIPSLDHIVGGGIPAGSI 198
+++ + Y+S+G LD ++GGGI GS+
Sbjct: 86 QIRKEMVYLSTGSSELDKLLGGGIKTGSV 114
>UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 541
Score = 31.5 bits (68), Expect = 4.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 115 VKNNLPYVSSGIPSLDHIVGGGIPAGSI 198
+K+ ++S+G+ +LD +GGGIP G I
Sbjct: 81 IKSPSKFISTGLHTLDSDLGGGIPTGEI 108
>UniRef50_Q9W213 Cluster: CG13521-PB, isoform B; n=5;
Sophophora|Rep: CG13521-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 1429
Score = 31.1 bits (67), Expect = 6.5
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 191 PAGIPPPT-IWSKDGIPEDTYGRLFF 117
P GIP PT IW KDG+P D + F
Sbjct: 213 PKGIPEPTLIWIKDGVPLDDLKAMSF 238
>UniRef50_Q54IX8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 539
Score = 31.1 bits (67), Expect = 6.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 171 NYMV*GWNTGRYVW*VIFHFC--AIYMRTYIYKFSKTTHFLLIYQADFCKILF 19
N MV G+N G YV+ + C A+ + + S T L Y++DFC I F
Sbjct: 245 NGMVIGFNPGHYVFSIASGSCSWAVPVTIPVEPISYTYETLWYYRSDFCSIEF 297
>UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5;
Gammaproteobacteria|Rep: DNA repair protein RadA -
Psychromonas sp. CNPT3
Length = 472
Score = 30.7 bits (66), Expect = 8.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 136 VSSGIPSLDHIVGGGIPAGSIFVV 207
VS+G+ LD ++GGGI GS+ ++
Sbjct: 84 VSTGLSELDRVLGGGITLGSVVLI 107
>UniRef50_P74848 Cluster: Amino acid permease YeeF like protein;
n=5; Salmonella|Rep: Amino acid permease YeeF like
protein - Salmonella typhimurium
Length = 448
Score = 30.7 bits (66), Expect = 8.6
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Frame = -2
Query: 134 YGRLFFTFVPFICVLISINFR---KLRIFY*YIKPIS----VKY-CLSIKIH 3
+G LF FV +CV I NFR + RIF I PI + Y CL++ IH
Sbjct: 360 FGALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIH 411
>UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3;
Cyanobacteria|Rep: DNA repair protein radA - Lyngbya sp.
PCC 8106
Length = 564
Score = 30.7 bits (66), Expect = 8.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 136 VSSGIPSLDHIVGGGIPAGSIFVVG 210
+SSG LD ++GGGI GS+ ++G
Sbjct: 87 MSSGYGELDRVLGGGIVPGSLVLIG 111
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,601,899
Number of Sequences: 1657284
Number of extensions: 5416322
Number of successful extensions: 14993
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 14519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14988
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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