Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A11
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0881 - 25623679-25623843,25624104-25624195,25624287-256244... 37 0.006
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 32 0.16
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 28 2.0
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 28 2.6
03_06_0773 + 36167986-36168148,36168325-36168714,36168790-361689... 27 3.4
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 27 4.5
11_01_0771 + 6453130-6454488 27 6.0
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103... 26 7.9
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 26 7.9
>06_03_0881 -
25623679-25623843,25624104-25624195,25624287-25624446,
25624586-25624668,25624845-25624913,25625480-25625555,
25625645-25625895,25626387-25626537
Length = 348
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
N +VSSGIP LD I+GGG GS+ ++
Sbjct: 37 NGAAFVSSGIPDLDRILGGGFLIGSVVMI 65
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 70 FRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGS 195
FR ++ I+G + K L YV SG+ S +V GG AGS
Sbjct: 387 FRTGVEQGPQIDGEQFKKILQYVKSGVDSGATLVAGGDRAGS 428
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 73 RKFIDISTHI-NGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVG 210
RK + + H+ G ++K N V IP+ DH+V + VVG
Sbjct: 162 RKLLLLKAHVFTGEELKGNWHSVHEAIPNRDHVVAVAVQNLQSVVVG 208
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 87 YKYAYKWHKSEK*PTIRIFRYSI--LRPYSWW 176
Y A KW EK +R+ Y++ L+P+ WW
Sbjct: 233 YMLANKWMVDEK--ELRVIHYTLGPLKPWDWW 262
>03_06_0773 +
36167986-36168148,36168325-36168714,36168790-36168965,
36169953-36170071,36170156-36170441
Length = 377
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 173 PTIWSKDGIPEDTYGR-LFFTFVPFICVLISINFRKLRIFY*YIKPI-SVKY 24
P+ WS G + LF+ +C++ IN + R F+ Y PI S KY
Sbjct: 147 PSYWSSAGHFDPAVPECLFYRLRSDLCLVQQINIQPFRAFFQYGDPIYSAKY 198
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 203 TKMLPAGIPPPTIWSKDGI 147
T + AG+PPP W DG+
Sbjct: 259 TTLADAGLPPPLPWEDDGL 277
>11_01_0771 + 6453130-6454488
Length = 452
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 203 TKMLPAGIPPPTI 165
T+MLP+G+PPP +
Sbjct: 408 TRMLPSGVPPPPV 420
>08_02_0243 -
14708055-14708416,14708487-14709324,14709482-14710323,
14710466-14710520,14711535-14711549,14713030-14713033,
14713340-14713424,14714045-14714084
Length = 746
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 241 DIMQF*KKFTNLQQKCCLQVFLHQLYGLRMEYRKIRMVGY 122
DI+ F + + +Q+CC +V +L L ++YR R + Y
Sbjct: 130 DIVDFLRAHS-YKQRCCDRVLFSRLAQLPLDYRIARRIKY 168
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -2
Query: 191 PAGIPPPTIWSKDGIP----EDTYGRLFFTFVPFICVLISINFRKLRIFY*YI 45
P+G PP IW IP DT L P + L + FRK+ + + Y+
Sbjct: 268 PSGSPPCPIWVMPQIPPAICPDTTNVLREVVSPQMLALGELEFRKIFMIFAYL 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,995,992
Number of Sequences: 37544
Number of extensions: 134203
Number of successful extensions: 351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -