Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A11
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    30   0.58 
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    30   0.58 
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    30   0.58 
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    30   0.58 
U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protei...    27   4.1  
U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z92789-8|CAB07222.3|  495|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z68336-9|CAA92741.3|  495|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U61946-5|AAC24389.1|  391|Caenorhabditis elegans Hypothetical pr...    26   7.2  

>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 61  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 198
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 91  MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 61  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 198
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 129 MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 176


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 61  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 198
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 91  MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 61  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 198
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 91  MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138


>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 91  STHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           S  I G   K  L   SSG  S D ++GG +   SI ++
Sbjct: 7   SVQIAGCSTKKRLLETSSGCDSFDTLIGGALVNSSIVLI 45


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +1

Query: 82  IDISTHINGTKVKNNL----PYVSSGIPSLDHI 168
           I +  ++N   V NNL    PYV S IPS++H+
Sbjct: 266 IGVLQNLNTIDVSNNLMTALPYVFSKIPSIEHV 298


>U40060-1|AAA81141.1|  341|Caenorhabditis elegans Collagen protein
           172, isoform a protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 114 FCAIYMRTYIYKFSKTTHFLLIYQADFCK 28
           FC++ M   IY + +T    ++ + DFC+
Sbjct: 31  FCSVVMLPLIYNYVQTLQTHMLNEMDFCR 59


>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 58  KMRSFRKFIDISTHINGTKVKNNLPYVSSGIPS 156
           K  S+ K I +STHI+ T    ++PY+S  IPS
Sbjct: 531 KYTSYVKPI-MSTHIHQTIKAQSIPYLSRAIPS 562


>Z92789-8|CAB07222.3|  495|Caenorhabditis elegans Hypothetical
           protein H02I12.8 protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 191 PAGIPPPTIWSKDG-IPEDTYGRLFFTFVPF 102
           PA    P ++  D  +PE++ GR  F F+PF
Sbjct: 399 PAQWKDPDVFDPDRFLPENSIGRKSFAFIPF 429


>Z68336-9|CAA92741.3|  495|Caenorhabditis elegans Hypothetical
           protein H02I12.8 protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 191 PAGIPPPTIWSKDG-IPEDTYGRLFFTFVPF 102
           PA    P ++  D  +PE++ GR  F F+PF
Sbjct: 399 PAQWKDPDVFDPDRFLPENSIGRKSFAFIPF 429


>U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A8.1b protein.
          Length = 642

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 NGTKVKNNLPYVSSGIPSLDHIVGGGIPAG 192
           NG    N+ P V+ G PS D +VG G P G
Sbjct: 472 NGILTVNSQPSVN-GAPSTDPLVGWGKPGG 500


>U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical
           protein C06A8.1a protein.
          Length = 663

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 NGTKVKNNLPYVSSGIPSLDHIVGGGIPAG 192
           NG    N+ P V+ G PS D +VG G P G
Sbjct: 493 NGILTVNSQPSVN-GAPSTDPLVGWGKPGG 521


>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 188 AGIPPPTIWSKD 153
           A +PPPT WS+D
Sbjct: 100 ANLPPPTFWSRD 111


>U61946-5|AAC24389.1|  391|Caenorhabditis elegans Hypothetical
           protein F47C12.2 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 228 FKRNSRTYNKNAACRYSSTNY 166
           F+ N RTY K  + + SSTNY
Sbjct: 221 FQPNCRTYEKGESGQLSSTNY 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,603,535
Number of Sequences: 27780
Number of extensions: 134465
Number of successful extensions: 396
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)