Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A10
         (780 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 543 QEQRT*RQIERPSERHGLVLLLEFRLRGREQIRQHSRNELGQRS 412
           ++++  R  +R S+   +  LL FRL+  +++  HS+   G+ +
Sbjct: 659 KDKKKIRAKKRWSQCMYMYFLLGFRLQANDELSAHSKEIRGENT 702


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 543 QEQRT*RQIERPSERHGLVLLLEFRLRGREQIRQHSRNELGQRS 412
           ++++  R  +R S+   +  LL FRL+  +++  HS+   G+ +
Sbjct: 659 KDKKKIRAKKRWSQCMYMYFLLGFRLQANDELSAHSKEIRGENT 702


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 122 CAARQRQTSYYDHGFHFR 69
           C A  +   YYD   HFR
Sbjct: 20  CKAESKVVCYYDSKSHFR 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,625
Number of Sequences: 336
Number of extensions: 2723
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)