Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A10
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   3.0  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   3.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.2  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 198 EVAQARAAHISALQQASKNNPNPNDDGSY 284
           EVA+ R   ++   +  KN P+P DD SY
Sbjct: 466 EVAEQRQLIVNHELEQEKNAPSPTDDKSY 494


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 190 THPKSHRLVPHTFPLFSRLRKITPTQMTT-DHTTLDGTMKST 312
           +HPK  RL+P  FP  S+ ++I+  ++   +  +LD  ++ T
Sbjct: 527 SHPKGMRLLPRLFPHLSKEQQISILKVVVYNFDSLDIVLRGT 568


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 229  PLFSRLRKITPTQMTTDHTTLDGTMKSTGNKLR 327
            P   +  +  PT+ +T  TTLDG++ +T    R
Sbjct: 1212 PTKRKYNRKAPTKSSTRQTTLDGSISNTKKSSR 1244


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 223 TFPLFSRLRKITPTQMTT-DHTTLDGTMKSTGNKL 324
           T  +F RLRK +  Q+TT D  TL  T+  +  KL
Sbjct: 317 TLSIFERLRKDSSLQLTTKDINTLFSTIALSPTKL 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,169
Number of Sequences: 5004
Number of extensions: 43354
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)