Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A10
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.049
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 32 0.60
SB_12663| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5) 30 1.8
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 28 7.4
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_48356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 35.5 bits (78), Expect = 0.049
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Frame = +2
Query: 347 RSCLERCPRPLMERCPC-CCSFMERCPSSFLEXXXXXXXXXXXXXXXXXXXXXXLGRSIC 523
+ C E CP+ CP CCS + CP++ L C
Sbjct: 1718 KECKESCPKVCGPGCPVQCCSDLNICPANCTGSACKPGCITIEDSVTVSLGNDKLCPEAC 1777
Query: 524 R*VRC--SCPTTMERPSSPGLECPRPPGLERSRSPGLECSR--SPIMERSSLLAIRC 682
+C SCP+T +SP + CP+ + + C + SP E ++ A +C
Sbjct: 1778 L-TKCLPSCPSTCCIKNSPPVVCPKSCETTCTPDCPVMCCKNSSPATECPTICASKC 1833
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
N P +Q N P +Q N P +Q N + + P +QP N
Sbjct: 214 NQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 254
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
N P +Q N P +Q N P +Q N + + P +QP N
Sbjct: 218 NQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 258
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +3
Query: 582 NAPAHQDWNAPAHQDWNAPAHQS------WNGAPSWQSGAPAHQPANIRLXNDGSGILDT 743
N P +Q N P +Q N P +Q+ N + + P +QPAN++ + S D
Sbjct: 238 NQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPTNQPANLQTTHAPSQPADQ 297
Query: 744 P 746
P
Sbjct: 298 P 298
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 582 NAPAHQDW---NAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
N P +Q + N P +Q N P +Q N + + P +QP N
Sbjct: 203 NLPPNQPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 246
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 31.9 bits (69), Expect = 0.60
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 539 SCPTTMERPSSPGLECPR--PPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQ 709
S P P + L PR P R++SP L +PI E S L +R P++ HQ
Sbjct: 2309 STPVPKSSPINSPLTSPRDSPVPFSRAKSPQLSVDFAPITESSVKLNVRLPQTSDSSHQ 2367
>SB_12663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 590 RPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR 700
R PG++ +RSPG + +RSP + + L + RSP R
Sbjct: 3 RSPGIQVARSPGRQVARSPGHQVARSLGRQVARSPGR 39
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 569 SPGLECPRPPGLERSRSPGLECSRS 643
SPG++ R PG + +RSPG + +RS
Sbjct: 4 SPGIQVARSPGRQVARSPGHQVARS 28
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -3
Query: 703 LAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 557
L+ W G W G F SW G SW+ G W G F
Sbjct: 140 LSSWFYGELSSSLSGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 188
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -3
Query: 703 LAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 557
L+ W G W G F SW G SW+ G W G F
Sbjct: 386 LSSWFYGELSSSLSGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 434
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -3
Query: 703 LAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 557
L+ W G W G F SW G SW+ G W G F
Sbjct: 44 LSSWFYGELSSSMTGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 92
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 646 W*AGAFQSW*AGAFQSWWAGAFQSW 572
W G SW +G SW++G SW
Sbjct: 533 WFYGVLSSWFSGELSSWFSGELSSW 557
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 655 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 572
F W G SW G W+ G F SW
Sbjct: 68 FSSWFYGEISSWFYGELSFWFYGEFSSW 95
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 655 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 572
F W G SW G W+ G F SW
Sbjct: 164 FSSWFYGEISSWFYGELSFWFYGEFSSW 191
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 655 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 572
F W G SW G W+ G F SW
Sbjct: 410 FSSWFYGEISSWFYGELSFWFYGEFSSW 437
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 640 AGAFQSW*AGAFQSWWAGAFQSW*AG 563
+G SW G SW++G SW +G
Sbjct: 527 SGELSSWFYGVLSSWFSGELSSWFSG 552
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/43 (27%), Positives = 14/43 (32%)
Frame = -3
Query: 700 AGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW 572
+ W G W G SW G SW+ G SW
Sbjct: 93 SSWFYGELSSSLSGELSSWLYGELSSWFYGELSSWFYGELSSW 135
>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
Length = 348
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 536 CSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPA 697
C+ +++E P EC P E + P EC+ P E + +L++ C P+
Sbjct: 157 CALISSLECAFIPSSECALIPCSECALIPSSECALIPSSESALILSLECALIPS 210
>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 649 DW*AGAFQSW*AGAFQSWWAGAFQSW*AG 563
DW AG W AG W AG W AG
Sbjct: 227 DWMAGWLAGWLAGWLAGWLAGWLAGWLAG 255
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/57 (26%), Positives = 20/57 (35%)
Frame = +3
Query: 588 PAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLXNDGSGILDTPEVAA 758
P H + P H + P H + P P H P + L LD P +A
Sbjct: 117 PPHSALDKPPHSALDKPLHSVLDKPPHSALDKPPHLPPTLTLDKPPHSALDKPPHSA 173
>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 545 PTTMERPSSPGLECPRPPGLERSRSP-GLECSRSP 646
PTT E P P + P+PP + S+ P GL R P
Sbjct: 452 PTTTETPIVPTVPGPQPPIIVGSKGPDGLRGYRGP 486
>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 548 TTMERPSSPGLECPRPPGLERSRSPGLECSRSP 646
+T P+ PG RP ER R LEC P
Sbjct: 50 STWTIPTDPGYNTRRPSSAERYRQSPLECRPKP 82
>SB_48356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 210 ARAAHISALQQASKNNPNPNDDGSYDPRWDNEE 308
++A I L++ SK + + +DD YD DNE+
Sbjct: 44 SKATGIKPLERESKEDNDRDDDDDYDDDVDNED 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,902,660
Number of Sequences: 59808
Number of extensions: 389758
Number of successful extensions: 1478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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