Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A10
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    34   0.092
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    33   0.16 
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    31   0.86 
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    30   2.0  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   6.0  
At2g08986.1 68415.m01009 hypothetical protein                          28   6.0  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = +2

Query: 530 VRCSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQ 709
           VR   PT + R S       R P   R RSP    SRSP   RS  +  R P    R HQ
Sbjct: 581 VRRRSPTPVNRRSRRSSSASRSPDRRRRRSPS--SSRSPSRSRSPPVLHRSPSPRGRKHQ 638

Query: 710 TXQR 721
             +R
Sbjct: 639 RERR 642


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
           ++PAH   ++PAH   ++PAH   +      S +PAH P++
Sbjct: 231 HSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSH 271



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
           ++PAH   ++PAH   ++PAH   +      S +PAH P++
Sbjct: 223 HSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSH 263



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLXNDGSGILDTP 746
           + P+H   +AP+H   +AP+H   +      + +P+H PA  +  +  S    +P
Sbjct: 235 HTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSP 289



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
           + P+H   + P+H   +AP+H   +      + AP+H PA+
Sbjct: 227 HTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAH 267



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 582 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPA 701
           +AP+H   +AP+H   ++P+H          S +PA  PA
Sbjct: 251 HAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPA 290



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 591 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 704
           +H   ++PAH   ++PAH   +      S +PAH P++
Sbjct: 218 SHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSH 255


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 303 HCPI*GRMIRRHLGWGYFSKPAEERKCVRHEPVRLRVCPEYC 178
           HC + GR+            P++E K    EP R+RVC  YC
Sbjct: 57  HCRLCGRVFCAKCAANSIPSPSDETKDSHEEPERIRVC-NYC 97


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 533 RCS-CPTTMERPSSPGLECPRPPGL 604
           +CS CP ++  P S G+ECPRPPG+
Sbjct: 383 KCSPCPESV--PDS-GIECPRPPGM 404


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
            factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 245  SLLKSGNVCGTSLCDFGCVQNIASILRQS--NVGGWAGPTGRVCAA 114
            S  K G +    LC FGC Q +   +R       GW  P G+  AA
Sbjct: 955  STKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVP-GQSSAA 999


>At2g08986.1 68415.m01009 hypothetical protein
          Length = 1218

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 190 THPKSHRLVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKSTGNKLRVN 333
           T PK+H    +T       +K+     T  HT  D TMK+  +K +VN
Sbjct: 759 TKPKTHMDFGYTMKALRSKKKVDTKPKT--HTNFDYTMKALRSKKKVN 804



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 190 THPKSHRLVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKSTGNKLRVN 333
           T PK+H    +T       +K+     T  HT  D TMK+  +K +VN
Sbjct: 390 TKPKTHMDFGYTMKALRSKKKVDTKPKT--HTDFDYTMKALRSKKKVN 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,476,104
Number of Sequences: 28952
Number of extensions: 250720
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)