Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A07
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   4.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   5.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.3  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.3  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   9.3  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +3

Query: 285 NSSVDLLTSSET*FRRALTTITNPSLRSG*DLVSSSFCTILATWKSS*VVTFTSIKLRNT 464
           +SS  + TSS + F  ++TTI++    S      SS  +IL++  SS   T  SI   +T
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST 599

Query: 465 VSSNHGSET 491
            S+   + T
Sbjct: 600 SSTFSSAST 608


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 479 WLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVV 613
           W+GNG    T   + +  + I  T HL    S +D  + N+  V+
Sbjct: 67  WIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADTVL 111


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 GGSADIFRNIVQKSADYD 346
           GG   +FR +  KS+DYD
Sbjct: 216 GGGRKLFRKVANKSSDYD 233


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 59  LLASSWTYKDLNMSYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRLYELAD 238
           +L+ S  YK L+    N  NV   +T S I LF+  +    +  + +W+   R L  L D
Sbjct: 243 VLSDSEFYKSLS----NLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLND 298

Query: 239 KLN 247
           +L+
Sbjct: 299 QLH 301


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 308 IFRNIVQKSADYDHESVVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYRF 469
           + ++++ K+    +E+ V+ +    +L+      DVE + S  +YID  E+Y F
Sbjct: 485 VMQSLLSKATSATNENSVRAFWAFMVLL----KSDVETVDSLEMYIDSLEQYSF 534


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 620 LKKEASNFDCHDYMSECTVEI 682
           LK+  S   C D+  ECT+EI
Sbjct: 9   LKQIQSTLRCIDFSKECTIEI 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,845
Number of Sequences: 5004
Number of extensions: 60190
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)